Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq7247 159 7e-34 >seq7247 Length=24577 Score = 159 bits (176), Expect = 7e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| |||||||| |||||||| || || || |||| Sbjct 8106 TACCACCACGAAGACGAAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCAG 8165 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||||||||| ||||| || ||||||||||| || | ||||||||| |||| Sbjct 8166 CGAGAGTGCGACCGTCTTCAAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGGAG 8225 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || ||||||||||| || || ||||| ||||| || || | ||| | Sbjct 8226 GGATACCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGA 8285 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAA 82789 |||| | ||| || ||||| || ||||| Sbjct 8286 CTTCGAGAGTGATGGTCTTACCAGTCAA 8313 Score = 140 bits (154), Expect = 6e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || || || ||||| ||||| ||||| || || ||||| | Sbjct 8398 TACCACCACGCAGACGAAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGG 8457 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || ||||| ||||||||||| |||||||| || | ||| || ||||| | Sbjct 8458 CCAGGGTACGTCCATCTTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTG 8517 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| |||||||||||||| || || ||||| ||||| ||||| || ||| | Sbjct 8518 GAATACCTTCTTTATCTTGAATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTCAA 8577 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786 | || | || || |||||||| || Sbjct 8578 CCTCGAGGGTGATGGTCTTGCCGGT 8602 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || |||| || ||||| |||||||| || || || || || ||||| | Sbjct 6958 ACCACCACGCAGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGC 7017 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || ||| || || || | |||||| || ||||||||||||| ||||| ||||| || Sbjct 7018 AAGTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGG 7077 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||||||||||||||| || || || || ||||| ||||| | || || Sbjct 7078 GATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTGTCAATTGTATCCGATGACTCGAC 7137 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAA 82789 ||| | || || |||||||| ||||| Sbjct 7138 TTCGAGGGTGATGGTCTTGCCAGTCAA 7164 Score = 120 bits (132), Expect = 6e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || ||||| ||||| ||||| ||||| ||||| | || | | ||| Sbjct 7259 ACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACC 7318 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | ||| |||||||| || || | || |||||| || || || || |||||||| Sbjct 7319 ATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCCGGTGGAATCCCTTCCTT 7378 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||| || || || ||||| ||||| || || || ||| ||||||| || || Sbjct 7379 ATCTTGAATTTTGGCCTTGACATTGTCAATAGTGTCCGAAGATTCGACTTCCAGTGTGAT 7438 Query 82775 CGTCTTGCCTGTCA 82788 || || || |||| Sbjct 7439 TGTTTTACCAGTCA 7452 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | ||| || || || | || ||||| ||||| || || ||||| ||||||| Sbjct 7821 CCTCCACGCAATCGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGCG 7880 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| | |||||| ||||||||||| || | |||||||||||| || Sbjct 7881 AGTGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGGGGA 7940 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || || || || || || || || || || ||| | ||| || Sbjct 7941 ATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGATGATTCAACC 8000 Query 82764 TCCAAAGTTATCGTCTTGCCTGT 82786 |||| || || || || || || Sbjct 8001 TCCAGCGTAATTGTTTTACCGGT 8023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981648279481597