Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq7247 105 4e-18 >seq7247 Length=24577 Score = 105 bits (116), Expect = 4e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||||| |||||| || || || ||||||||||||| Sbjct 8399 ACCACCACGCAGACGAAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGC 8458 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || | ||||||||||||||| || | ||| ||||| ||| | || Sbjct 8459 CAGGGTACGTCCATCTTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGG 8518 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||| || ||| |||| ||| | ||| ||| ||||| | Sbjct 8519 AATACCTTCTTTATCTTGAATCTTGGCCTTC-ACATTGTCAATGGTATCGGAAGATTCAA 8577 Query 33701 CGTCAACCGTGATCGTTTTACCTGT 33725 | || | ||||| || || || || Sbjct 8578 CCTCGAGGGTGATGGTCTTGCCGGT 8602 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | ||| || | ||| | ||| ||||| || ||||| || |||||||| | | Sbjct 7821 CCTCCACGCAATCGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGCG 7880 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || ||||||||||| || ||||| |||| ||| || |||||| | || Sbjct 7881 AGTGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGGGGA 7940 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| | | || | ||| | |||||| |||||| || Sbjct 7941 ATGCCTTCCTTGTCCTGGATTTT-GGCCTTGACGTTGTCGATGGTGTCAGATGATTCAAC 7999 Query 33702 GTCAACCGTGATCGTTTTACCTGT 33725 || | ||| || |||||||| || Sbjct 8000 CTCCAGCGTAATTGTTTTACCGGT 8023 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || ||||||||||| ||| ||| ||||| || ||||| || | Sbjct 7534 ACCACCACGAAGACGCAATACCAAATGTAGGGTGGACTCCTTTTGAATATTGTAGTCAGC 7593 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| |||| ||||| ||||| ||||| | ||| || ||||| | || Sbjct 7594 TAGCGTACGTCCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGG 7653 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| |||||| || | |||| ||| | ||||| ||||| | Sbjct 7654 GATACCCTCCTTGTCCTGAATTTT-TGCCTTGACATTGTCGATTGTGTCAGACGATTCGA 7712 Query 33701 CGTCAACCGTGATCGTTTTACCTGT 33725 | || | || || || ||||| || Sbjct 7713 CTTCCAAGGTAATAGTCTTACCGGT 7737 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || || ||||| || ||||| ||| ||||| ||||||||||||| Sbjct 6958 ACCACCACGCAGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGC 7017 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || | || ||||||||||| || ||||| || | ||||| || ||| | || Sbjct 7018 AAGTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGG 7077 Query 33642 CACACCTTCTTTGTC 33656 | ||||| || || Sbjct 7078 GATGCCTTCCTTATC 7092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328647021524160