Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7247 107 5e-18 >seq7247 Length=24577 Score = 107 bits (118), Expect = 5e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250 || || || || || ||||| | || || ||| ||| || || | || || ||| Sbjct 8605 CTTACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTGAAG 8546 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 ||||||||||| |||||||| ||| || ||| ||| | |||||||| |||||| Sbjct 8545 GCCAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAGCAACGTCTTATCTTTGCCGGA 8486 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 || || | ||||||||| | || |||||||||||||| ||||||| || || |||||| Sbjct 8485 AAACAACTCGAAGATGGACGTACCCTGGCCGATTACAACATCCAGAAGGAATCCACTCTT 8426 Query 206371 CA 206372 || Sbjct 8425 CA 8424 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||| | ||||| ||| || |||||| | || || ||| Sbjct 8310 ACTGGTAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGCC 8251 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| ||||| || || || || ||| | |||||||| || || ||| Sbjct 8250 AAGATTCAAGACAAAGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCTGGGAAG 8191 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || | ||||| || | ||| | || || |||||| | ||||||||||||||||| ||| Sbjct 8190 CAACTTGAAGACGGTCGCACTCTCGCTGACTACAACATTCAGAAAGAGTCTACTCTCCAC 8131 Query 206374 CTTGTTTTGAGACTTCG 206390 | ||| | | ||||| Sbjct 8130 TTGGTTCTTCGTCTTCG 8114 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||| || || ||| || |||| ||||| || || || Sbjct 7101 AAGATTCAAGATAAGGAAGGCATCCCACCAGACCAACAGCGACTAATCTTTGCAGGTAAA 7042 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||| ||||| | || | |||||||||||| | || || ||||||||||||||| Sbjct 7041 CAATTGGAGGATGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTTCAC 6982 Query 206374 CTTGTTTTGAGACTTCG 206390 | || ||| |||| || Sbjct 6981 TTGGTCTTGCGACTGCG 6965 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | | ||| | ||| ||||||||||||||||| | || |||||||| | ||| Sbjct 8114 CGAAGACGAAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTG 8173 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | || ||||| || ||||| || || |||||||| ||||||||| Sbjct 8174 CGACCGTCTTCAAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGA 8218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181605434210383