Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq7247 82.4 7e-11 >seq7247 Length=24577 Score = 82.4 bits (90), Expect = 7e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 25199 ACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAA 25258 ||||| || | || || | ||||||||| | || || ||||| | || || | Sbjct 7737 ACCGGTAAGACTATTACCTTGGAAGTCGAATCGTCTGACACAATCGACAATGTCAAGGCA 7678 Query 25259 AAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAA 25318 |||||| || || |||||||| || || ||||| ||| | || |||| || ||| ||| Sbjct 7677 AAAATTCAGGACAAGGAGGGTATCCCACCTGATCAACAACGTCTTATTTTCGCCGGGAAA 7618 Query 25319 CAACTCGAAGATGATAGAAATGTCAGC-GATTACAATATTCAAAAAGAATCCACCATTCA 25377 || || ||||| | | | | ||| || |||||||||||||| || |||||| | || Sbjct 7617 CAGCTGGAAGACGGACGTACGCT-AGCTGACTACAATATTCAAAAGGAGTCCACCCTACA 7559 Query 25378 TTTAGTGTT 25386 ||| || || Sbjct 7558 TTTGGTATT 7550 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 25199 ACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAA 25258 ||||| || | ||||| |||| || ||| | |||||| || || | || || Sbjct 8602 ACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTGAAGGCC 8543 Query 25259 AAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAA 25318 || ||| |||||||| ||||| || || || |||||| | || || | | ||| ||| Sbjct 8542 AAGATTCAAGATAAAGAAGGTATTCCACCAGACCAGCAACGTCTTATCTTTGCCGGAAAA 8483 Query 25319 CAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCAT 25378 ||||||||||||| | | | ||||||||| || || || |||||||| ||||| Sbjct 8482 CAACTCGAAGATGGACGTACCCTGGCCGATTACAACATCCAGAAGGAATCCACTCTTCAT 8423 Query 25379 TTAGT 25383 || || Sbjct 8422 TTGGT 8418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445015267779360