Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7247 89.7 5e-13 >seq7247 Length=24577 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| ||||| || | ||| |||||||||||||||||||||||| Sbjct 6959 CCACCACGCAGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCA 7018 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | |||||| | || |||| || ||||| ||||| || | ||||| ||||| | || Sbjct 7019 AGTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGGG 7078 Query 35630 ACGCTCTCCTTGTC 35643 | || ||||| || Sbjct 7079 ATGCCTTCCTTATC 7092 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||||||||| || |||||||||||| ||||| || || Sbjct 7535 CCACCACGAAGACGCAATACCAAATGTAGGGTGGACTCCTTTTGAATATTGTAGTCAGCT 7594 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||||||| || || || || || | || || || || | || Sbjct 7595 AGCGTACGTCCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGGG 7654 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| ||| ||||| ||| | | | | | ||||| |||||| || Sbjct 7655 ATACCCTCCTTGTCC-TGAATTTTTGCCTTGACATTGTCGATTGTGTCAGACGATTCGAC 7713 Query 35689 CTCCACCGTGATCGTTTTACCCGT 35712 |||| || || || ||||| || Sbjct 7714 TTCCAAGGTAATAGTCTTACCGGT 7737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450713454532840