Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq7247 120 3e-22 >seq7247 Length=24577 Score = 120 bits (132), Expect = 3e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||||| ||||| ||||||||||| |||||||| | | || | Sbjct 7544 AGACGCAATACCAAATGTAGGGTGGACTCCTTTTGAATATTGTAGTCAGCTAGCGTACGT 7603 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || |||||||| || || ||||| | ||| || ||||| || || || || || Sbjct 7604 CCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGGGATACCCTCC 7663 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||||||| ||||| ||| | |||||| |||||||| || || | ||| Sbjct 7664 TTGTCCTGAATTTTTGCCTTGACATTGTCGATTGTGTCAGACGATTCGACTTCCAAGGTA 7723 Query 134676 ATGGTTTTACCGGT 134689 || || |||||||| Sbjct 7724 ATAGTCTTACCGGT 7737 Score = 116 bits (128), Expect = 4e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || || || |||||||||||||| | | ||| || ||| || || || Sbjct 8131 GTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCGAGAGTGCGACCGTCTTCAAGTTG 8190 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||| || | ||| || ||||| || || || || ||||| |||||||| || Sbjct 8191 CTTCCCAGCAAAGATAAGACGTTGTTGATCAGGAGGGATACCCTCTTTGTCTTGAATCTT 8250 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | ||||||||| ||||| || |||||||| ||||| ||||| || Sbjct 8251 GGCCTTGACATTGTCAATTGTGTCGGAGGATTCGACTTCGAGAGTGATGGTCTTACCAGT 8310 Query 134690 TAAA 134693 ||| Sbjct 8311 CAAA 8314 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||||||| || | ||| || || || ||||||||||||||||| ||| ||| || | Sbjct 6968 AGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGC 7027 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||||| |||||||| || | ||||| || || || || |||||||| Sbjct 7028 CCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGGGATGCCTTCC 7087 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || ||||| ||| | ||| || || || || || ||||| || Sbjct 7088 TTATCTTGAATCTTGGCCTTGACGTTGTCAATTGTATCCGATGACTCGACTTCGAGGGTG 7147 Query 134676 ATGGTTTTACCGGTTAAA 134693 ||||| || || || ||| Sbjct 7148 ATGGTCTTGCCAGTCAAA 7165 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | | ||| | ||| || || || || ||||||||||| || ||||| || | Sbjct 7821 CCTCCACGCAATCGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGCG 7880 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || | ||||| || ||||| |||| ||| || ||||| || || Sbjct 7881 AGTGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGGGGA 7940 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || ||||| ||||| ||| | ||||| || ||||| || Sbjct 7941 ATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGATGATTCAACC 8000 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || || ||||| ||||||||||| Sbjct 8001 TCCAGCGTAATTGTTTTACCGGT 8023 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || ||||||||||| || |||||||| ||| | | ||| | || ||||| ||| Sbjct 8424 TGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGGGTACGTCCATCTTCGAGTTGT 8483 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || | ||| ||||| || || || || |||||||| |||||||| || Sbjct 8484 TTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTTG 8543 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || ||| | || ||||| ||||| || ||||| || ||||| || ||||| Sbjct 8544 GCCTTCACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTGCCGGT 8602 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | || || | ||| || || || || |||||||| || || ||||| || Sbjct 7246 TTCCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCG 7305 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| || || || | || || || || |||||||| || || || || || | Sbjct 7306 CAAGTGTGCGACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCCGGTG 7365 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||||||||| ||||| ||| | ||||| || ||||| | Sbjct 7366 GAATCCCTTCCTTATCTTGAATTTTGGCCTTGACATTGTCAATAGTGTCCGAAGATTCGA 7425 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | || || || || |||||||| || Sbjct 7426 CTTCCAGTGTGATTGTTTTACCAGT 7450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505308546481960