Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq11248 111 2e-19 >seq11248 Length=18918 Score = 111 bits (122), Expect = 2e-19 Identities = 152/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 ||||| || || || || |||| ||||||| ||| |||||| || |||||||| Sbjct 4585 ATCTGGAAGCCATAGAAGCATCGAGCTTCAGCCGCTTGAACCTCTCCACTGAATCTTTCA 4526 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATA 40057 ||| ||||| || || |||||||| ||| ||||| || || | |||||||| ||| Sbjct 4525 ATCAAGTTTTCGTTGACAATTCCATCCGAAGCAGCAAAGAAAGCTAGGACATGTTTGATA 4466 Query 40058 AAATATTTTTCATCGGGTGTCAATTTATTC---CAGTCATTGATATCTTTTGATATATCT 40114 || | ||| ||||| ||||| | ||| || || | ||||| || || | ||| Sbjct 4465 AAGTGTTTCTCATCATCATTCAATCTGTTCTCCCAATCGTGCATATCCTTCGAAAGATCG 4406 Query 40115 ACTTCTTCAGCTGTCCAAAACGACGCCTCTGC 40146 | |||||| ||||||||||| || ||||| || Sbjct 4405 ATTTCTTCGGCTGTCCAAAATGAAGCCTCGGC 4374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686786676201720