Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5669 134 1e-26 >seq5669 Length=13838 Score = 134 bits (148), Expect = 1e-26 Identities = 311/466 (67%), Gaps = 12/466 (3%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || || ||||||||||| || |||| |||| ||| || | || || | || Sbjct 2652 CCCAAGATCGTCAATGGTCCTGAGATTCTAAACAAATTTGTGGGAGAGTCTGAGAAGAAC 2711 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTC- 19547 | ||| ||||||||||| ||||||| |||| | ||| | |||| | || || Sbjct 2712 ATTCGAGAGTTGTTTGCTGATGCTGAAGTAGAATACAAA-GCAAAGGGAGATGAA--TCA 2768 Query 19548 --TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---- 19601 ||| ||||| || || | ||||||||||| ||||| || || |||||||| || Sbjct 2769 GGTTTACACATCATCATTTTCGATGAATTGGATGCAATTTGCAAACAAAGAGGATCAACG 2828 Query 19602 --TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGT 19659 ||| | | |||||| || | || || |||||||| || || || | |||||| Sbjct 2829 GGTGGGGGGACTGGAGTGGGCGATTCGGTCGTTAATCAACTTCTCTCCAAGATGGACGGT 2888 Query 19660 GTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGAC 19719 || | ||||| || || || || | || || ||||| ||| | || || | || || Sbjct 2889 GTAGATCAACTTAACAACATCTTGATCATCGGAATGACCAATCGTCTAGACATGATTGAT 2948 Query 19720 AGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAA 19779 || | |||||||| ||||| |||||| | | || || || || || ||||| Sbjct 2949 GAAGCACTTTTACGACCTGGTCGATTGGAAGTTCACATGGAGATCTCTTTGCCTGATGAG 3008 Query 19780 TGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTA 19839 |||| || | ||||| | || || ||||| ||| ||| | ||||||| | | Sbjct 3009 GGTGGTCGACTACAAATTCTGAATATCCATACGGCAAAGATGAGGACAAATAACGTGATG 3068 Query 19840 AATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACT 19885 | ||||| |||||||||| | || || ||||| |||| Sbjct 3069 GCAGGTGATGTGATTCTAGAAGAATTAGCTGCTTTGACCAAGAACT 3114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397387103859115