Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq12155 95.1 1e-14 seq12271 82.4 9e-11 >seq12155 Length=30793 Score = 95.1 bits (104), Expect = 1e-14 Identities = 402/626 (64%), Gaps = 18/626 (3%) Strand=Plus/Minus Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 ||||||||||| | ||| |||||| || || || ||||| || ||| | || | Sbjct 28721 AATCAAAAGAACCTTGGTACCATCAAGTCATCGAACCTGTGTACTGAGATCATCGAGTAC 28662 Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085 ||| | ||| ||| ||| || |||||| | || || || || || || | |||| | Sbjct 28661 TCAGCCCCAGACGAGGTGGCGGTTTGTAACTTGGCCTCGATAGCGCTGCCGACGTATAT- 28603 Query 105086 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACC 105145 || || || | | ||||| |||| || |||||||| ||||| ||||| Sbjct 28602 ----CACCGATGGAGTC-TATGATTTCCAAAAGCTACACGAAGTAACGAAGGAAGTCACG 28548 Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCT 105205 ||| | || | | |||||| || | ||||||||| | ||| || || Sbjct 28547 TGGAACTTGAATCGTATAATTGATGTGAACTACTACCCCGTTCCGGAAGCTAAAAAGTCC 28488 Query 105206 AATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTC--ATTC 105263 || |||||||| || || ||||| | || || | || | || |||| ||| | || Sbjct 28487 AACATGAGACATCGCCCCATTGGAATTGGAGTAAACGGATTGGCAGATGCGTTCCAAATC 28428 Query 105264 TTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGA 105323 ||| || | |||| || || ||||||||| || | || || | || || |||| Sbjct 28427 -TTGAAGCTTC-CATTCGACTCACCGGAAGCGAAGAAATTGAACGCCCAGATCTTCGAGA 28370 Query 105324 CCATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCAT 105380 | | || ||||| || ||||| || ||| ||| | || | || || || ||| Sbjct 28369 CACTTTACCACGCAGCACTTGAAGC---CTCAAACGAGCTTGCCGTGGCGGAAGGCGCAT 28313 Query 105381 ATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAG 105440 ||||||| ||| ||||| || ||| ||||| | | |||| |||||||||| Sbjct 28312 ATGAAACGTTTCCCGGTTCGCCCGCTAGTCAAGGAGAATTACAATACGATATGTGGG-GC 28254 Query 105441 GTGAGACCAAGCTTCACTACGAC-TGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGT 105499 || | ||| | | ||| ||||| | ||| || ||| || |||| | || Sbjct 28253 GTCACACCCTCCGACCTGTGGACATGGGACGATCTGAAAGAAAAGATTAAGGCTACCGGC 28194 Query 105500 CTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 105559 || | ||| || | | || || ||||| || || || ||| |||||| ||||| Sbjct 28193 CTGAGAAACTCACTTTTGCTTGCGCCGATGCCTACTGCTTCGACCAGTCAAATCATGGGT 28134 Query 105560 AATAATGAATGCTTTGAACCCTACAC 105585 |||||||| ||||| || ||||| Sbjct 28133 TTCAATGAATGTTTTGAGCCTTACAC 28108 >seq12271 Length=8926 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 7526 AGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAG 7585 |||||||||||||| || || || |||||||||| |||||| ||| | |||||||| Sbjct 1733 AGAGATTGGGGTCATGCCAAAGATTATGTTGAAGGCATGTGGAGAATGTTACAACAAGAT 1792 Query 7586 GAAGCCGACGAATATGTAGTAGCAACGGGTGAGACCCA 7623 | |||||| || ||||| |||| || ||||| || || Sbjct 1793 GTAGCCGAAGATTATGTGTTAGCTACTGGTGAAACACA 1830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583157103520520