Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq7247 183 9e-41 seq13844 131 5e-25 seq13026 127 6e-24 seq3259 123 8e-23 seq14177 100 9e-16 >seq7247 Length=24577 Score = 183 bits (202), Expect = 9e-41 Identities = 169/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || ||||| |||| || |||||||||||||| || || ||||| ||||| | Sbjct 7813 TTTGCATGCCTCCACGCAATCGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGT 7872 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||||| | ||| || |||||||| | |||||| ||||||||||| |||||||| |||| Sbjct 7873 AATCAGCGAGTGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGAT 7932 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| ||||| || ||||| ||||| || || || || || || | ||||||| Sbjct 7933 CTGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGATG 7992 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 |||||| || || |||| ||| || ||||| || Sbjct 7993 ATTCAACCTCCAGCGTAATTGTTTTACCGGTAAG 8026 Score = 163 bits (180), Expect = 9e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | ||||||||| || || || || || || ||||| Sbjct 8396 CATACCACCACGCAGACGAAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATC 8455 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || |||||||| ||||||||||| |||||||| ||||||||||| || || Sbjct 8456 GGCCAGGGTACGTCCATCTTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGG 8515 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||||||||| ||||| || || || ||||| ||||| | ||| || | ||| Sbjct 8516 TGGAATACCTTCTTTATCTTGAATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTC 8575 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||| || || || | ||||| ||||| || Sbjct 8576 AACCTCGAGGGTGATGGTCTTGCCGGTAAG 8605 Score = 158 bits (174), Expect = 4e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || |||||||||||||| ||||| || || || Sbjct 8104 CATACCACCACGAAGACGAAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTC 8163 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || ||||||||||| || ||||||||||| |||||||| |||||||| Sbjct 8164 AGCGAGAGTGCGACCGTCTTCAAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGG 8223 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || ||||| || ||||| || || || ||||| ||||| | || || | ||| Sbjct 8224 AGGGATACCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTC 8283 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||||| || || | ||||| || || Sbjct 8284 GACTTCGAGAGTGATGGTCTTACCAGT 8310 Score = 147 bits (162), Expect = 7e-30 Identities = 163/214 (76%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 140504 TTACAT---ACCACCACGTAATCTTA-GAACAAGATGAAGAGTAGACTCTTTTTGAATAT 140559 |||||| ||||||||| | || | || |||| |||||||||||||| |||||||| | Sbjct 6949 TTACATTTGACCACCACGCAGTCGCAAGACCAAG-TGAAGAGTAGACTCCTTTTGAATGT 7007 Query 140560 TATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCT 140619 | ||||| | | |||||||||||| || | |||||| || ||||||||||| || || | Sbjct 7008 TGTAATCGGCAAGTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTT 7067 Query 140620 GATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAG 140679 | || || || || ||||| ||||| ||||| || || || || || ||||| | ||| | Sbjct 7068 GGTCTGGTGGGATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTGTCAATTGTATCCG 7127 Query 140680 ATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||| || ||||| || || | ||||| || || Sbjct 7128 ATGACTCGACTTCGAGGGTGATGGTCTTGCCAGT 7161 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||||| | || |||||||||||||| || || || || ||||| ||||| Sbjct 7244 CATTCCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATC 7303 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | ||| || ||||| || | ||| |||||||| || || | ||||| || || || Sbjct 7304 CGCAAGTGTGCGACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCCGG 7363 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| ||||| ||||| |||||||| || || ||||| ||||| | || || | ||| Sbjct 7364 TGGAATCCCTTCCTTATCTTGAATTTTGGCCTTGACATTGTCAATAGTGTCCGAAGATTC 7423 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||||| ||||| | ||| || || || || Sbjct 7424 GACTTCCAGTGTGATTGTTTTACCAGTCAG 7453 Score = 143 bits (158), Expect = 8e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | | || | ||| || || ||||| ||||||||||| | Sbjct 7527 TTTGCATACCACCACGAAGACGCAATACCAAATGTAGGGTGGACTCCTTTTGAATATTGT 7586 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | |||| || || || || ||||| || ||||| || || || || |||||||| |||| Sbjct 7587 AGTCAGCTAGCGTACGTCCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGAT 7646 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || || || ||||||||||| || || ||||| || || | ||||| | Sbjct 7647 CAGGTGGGATACCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCGATTGTGTCAGACG 7706 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||| ||||| | |||| ||||| ||||| || Sbjct 7707 ATTCGACTTCCAAGGTAATAGTCTTACCGGTGAG 7740 >seq13844 Length=20562 Score = 131 bits (144), Expect = 5e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | || |||||| | || ||||| || |||||||||| ||| ||||| ||||||||| Sbjct 2149 GCTGTCGGTATCGATCTCGGAACTACCTACTCTTGTGTTGGTGTATGGCAGAATGATCGT 2208 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| ||||| || ||||| || ||| | || || || || ||||| || || || Sbjct 2209 GTTGAAATCATTGCCAACGATCAGGGAAACCGTACCACACCTTCTTACGTCGCTTTCACT 2268 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || |||| || |||| ||||| | || || ||||||| || || || | || Sbjct 2269 GACTCTGAACGGTTGATCGGTGACGCCGCCAAGAATCAAGTGGCAATGAACCCCCACAAC 2328 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGT 349408 || ||||| || || ||||| || |||||| Sbjct 2329 ACCGTTTTCGACGCCAAGCGTCTCATTGGT 2358 Score = 116 bits (128), Expect = 1e-20 Identities = 214/314 (68%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 ||| | || || || || || || ||||| | ||||| || || || ||||| || Sbjct 2706 GTTGTCACCGTCCCTGCTTACTTCAATGACTCTCAGCGACAAGCCACCAAGGATGCCGGT 2765 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 || | || | || |||| | || || || ||||| || ||||| || || || Sbjct 2766 TTGATCTCTGGTCTCAACATTCTTCGTATCATCAACGAACCTACCGCTGCCGCCATCGCC 2825 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || ||||| || | || | || ||| | || || || ||| | || ||| Sbjct 2826 TACGGTCTTGACAAGAAGACCGTTGGTGAGCGCAATGTGCTCATCTTCGATCTTGGAGGT 2885 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 ||||| |||||||| || || | || |||| ||||| || || || || ||||| ||| Sbjct 2886 GGTACCTTTGATGTCTCTCTCTTGACTATTGAGGAGGGTATCTTCGAGGTCAAAGCCACT 2945 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 |||||||| || || | ||||| ||||||||||| || ||||||||| || || || Sbjct 2946 GCTGGTGACACTCACTTGGGTGGTGAAGATTTTGACAACCGTCTCGTTAACCACTTCGTG 3005 Query 349913 AAAGAATTTAAGCG 349926 | || || ||||| Sbjct 3006 ACCGAGTTCAAGCG 3019 Score = 91.5 bits (100), Expect = 4e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 ||||||||||||||||| || || || || |||||||| ||||| || || || || || Sbjct 2980 TCAAAATCTTCACCACCCAAGTGAGTGTCACCAGCAGTGGCTTTGACCTCGAAGATACCC 2921 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || |||||| | || | || |||||||| |||||||| || | ||| || Sbjct 2920 TCCTCAATAGTCAAGAGAGAGACATCAAAGGTACCACCTCCAAGATCGAA 2871 Score = 89.7 bits (98), Expect = 2e-12 Identities = 166/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 183360 GTTGAACCACCGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTT 183419 || |||||||| || ||||| | |||| | ||| || ||| | || ||| | Sbjct 3364 GTGGAACCACCAACCAATACAATCTCATGCACATTGGCCTTGTCAATCTTGGAGTCTCTC 3305 Query 183420 AAAACTTTTTCAACAGGGTCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAAT 183479 || ||||| || ||||| |||||||| ||||| || || ||| || | ||| || ||| Sbjct 3304 AACACTTTCTCGACAGGCTCCATAGTCTTTCTGAACAAGTCTTGGCAGAGCTCCTCGAAT 3245 Query 183480 CTTGCTCTAGTTAAAGATGaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATC 183539 | || | || | ||| | | ||||| | ||| | | | |||||||||||| || Sbjct 3244 CGGGCCCGGGTAAGAGACGTGTAGAAGTCGACACCCTCGAAAAGGGAATCAATTTCGATA 3185 Query 183540 GATGTTTGTGTAGATGATGATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGA 183599 || ||||| | || ||||| | |||| || || || || || || |||| ||||| Sbjct 3184 GAGGTTTGAGCAGCGGATGAGAGAGTTCGCTTGGCACGCTCGCAAGCAGTTCGAAGTCGT 3125 Query 183600 CGTA 183603 |||| Sbjct 3124 CGTA 3121 >seq13026 Length=36335 Score = 127 bits (140), Expect = 6e-24 Identities = 263/390 (67%), Gaps = 6/390 (2%) Strand=Plus/Minus Query 378120 ATCAAATCCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGT 378179 ||| | |||||| || ||||| ||||| || || | | | ||||| ||| || Sbjct 21166 ATCCACTCCATCTTCACCATAAACAAATTGCACGATATCACCCAATGAGTTTCGTACCGT 21107 Query 378180 CATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACC 378239 |||||| ||||| | ||| ||||||||||| | | || || |||||||| Sbjct 21106 TCCATCATAAGCTACCATCACATCCTCTAATGCTTTCACCAATCTTCTCTGGATATAACC 21047 Query 378240 AGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAA 378299 || | || || || || |||||||| ||||| ||||||| |||| ||||| || Sbjct 21046 TGTCTCTGCTGTCTTTACAGCGGTATCAATCAAACCTTCACGACCGGCCATAGCATGAAA 20987 Query 378300 GAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCC 378359 ||| || || || || ||||||| || | | ||| |||||| |||||| | | | Sbjct 20986 GAAGAACTCCTGGGGTGTCAGTCCACGAAGATAAGAATTCTCAACAAATCCACGAGACTC 20927 Query 378360 TGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAAT 378419 || |||| ||||| || || |||| ||||| || |||| || || || || ||||| Sbjct 20926 GGGTGAATAATCATCCTTGGTGAAATGGGGTAAGGTCCGATACTTGAAACCGTAGGGAAT 20867 Query 378420 TCGTTTTCCATCAACATTCTGTTGACCAAGTGCAGAAAC---CATTTGAGCAATATTTAA 378476 |||||| || || || ||||| || | || || | |||||||| ||| || | Sbjct 20866 TCGTTTACCCTCGACTGATTGTTGTCCGA---CACAAGCTGACATTTGAGAAATGTTGAT 20810 Query 378477 ATCACTACCTTTAGACCCAGCATTAACCAT 378506 | |||||| || ||||| | ||||| Sbjct 20809 GAAAGAACCTTTCGAACCAGCCGTGACCAT 20780 >seq3259 Length=9191 Score = 123 bits (136), Expect = 8e-23 Identities = 252/372 (68%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 67897 GAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCTATCATCACGGT 67956 || |||||||| || ||||| | ||||| | | |||||||||| ||||||||||| Sbjct 5408 GAGATTAAAGTAGCTCAATTGGGAGGTTACTGTGCCGAACATTCAGCTTATCATCACGGG 5349 Query 67957 GAAGCTAGTTTAAATTCATCAATTGTAGGTTTAGCTCAGAATTTTGTTGGATCAAATAAT 68016 ||| ||| | | | | ||||| | | | || || || ||||| ||| ||||| Sbjct 5348 GAACAGAGTCTTACACAAACGATTGTCGCTCTTGCACAAAACTTTGTCGGAAGCAATAAC 5289 Query 68017 ATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACTTGGAGGAAAAGATGCT 68076 || ||| | || ||| || || ||||| || || ||| ||| || |||||||| Sbjct 5288 ATCAATGTGCTTTCACCTAATGGACAATTCGGTACAAGAGCCAATGGTGGTAAAGATGCA 5229 Query 68077 GCATCTGAAAGATATATATTTACACATCTAAATACTTTAACTAGACTTATCTTTAGACAA 68136 || |||| ||| ||||| ||||| || | | | | || || | ||||| || Sbjct 5228 GCCTCTGCAAGGTATATCTTTACCAATATTGAAAAGATTACCAGGGTGATCTTCCCACCT 5169 Query 68137 GAAGATGATAATATTCTTGAA-TATTTAGAAGATGATGGTGATAAAGTTGAGCCAATCTA 68195 |||||||| || |||| || || || || ||||| | | || | || ||| | Sbjct 5168 CAAGATGATCAT-GTCTTAAATTACTTGACTGACGATGGAGCTCAAATCGAACCAGAATG 5110 Query 68196 TTATGTTCCTATTATTCCTATGATTTTAGTAAATGGTTCAAAAGGGATTGGCACTGGATT 68255 ||||| ||| | | || ||| | ||||||||||| |||| || ||||| || |||| Sbjct 5109 GTATGTACCTGTCTTACCGATGGTCTTAGTAAATGGCTCAAGTGGAATTGGAACCGGATG 5050 Query 68256 TAGTACAGATAT 68267 ||| ||||||| Sbjct 5049 GAGTTCAGATAT 5038 >seq14177 Length=10849 Score = 100 bits (110), Expect = 9e-16 Identities = 182/267 (68%), Gaps = 11/267 (4%) Strand=Plus/Plus Query 349634 TTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTT 349693 || ||||| || || ||| || || || |||||||| | || || || || || ||| Sbjct 4006 TTCAATGACGCTCAACGTCAGGCTACTAAGGATGCTGGTACGATCGCTGGTTTGAACGTT 4065 Query 349694 CTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGT 349753 || | || | || || ||||| | || || ||||| ||||| |||||||| Sbjct 4066 CTTCGTATTGTCAACGAGCCCACCNCCGCCGCTATTGCCTATGGTCTTGATAA------- 4118 Query 349754 GACCAAGaaaaaa----aTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATC 349809 ||||||| || | || || | | |||| | ||||||||||| || ||||| || Sbjct 4119 GACCAAGGGTGAACGTCAAATCATTGTCTATGATCTTGGTGGTGGTACCTTCGATGTTTC 4178 Query 349810 ACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCT 349869 ||| || | | || ||||| | || || || || || ||||||||||| || | Sbjct 4179 ACTCCTTTCGATCGATGAGGGTGTGTTCGAGGTGTTGGCTACAGCTGGTGATACCCACTT 4238 Query 349870 TGGTGGAGAAGATTTTGATAATCGTCT 349896 ||||| |||||||| ||||| || || Sbjct 4239 GGGTGGTGAAGATTTCGATAACCGACT 4265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514978271876069