Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7247 174 2e-38 seq13718 95.1 1e-14 >seq7247 Length=24577 Score = 174 bits (192), Expect = 2e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||||||||| || || || |||||||| || |||| ||||| ||| ||||| Sbjct 8605 CTTACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTGAAG 8546 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || ||||| || || || || ||||| ||||||||||| ||||| || ||||| || Sbjct 8545 GCCAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAGCAACGTCTTATCTTTGCCGGA 8486 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || |||||||| |||| |||||||| || || || || |||| ||||||||||||||| Sbjct 8485 AAACAACTCGAAGATGGACGTACCCTGGCCGATTACAACATCCAGAAGGAATCCACTCTT 8426 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| | || | ||||| || ||||| Sbjct 8425 CATTTGGTACTTCGTCTGCGTGGTGG 8400 Score = 154 bits (170), Expect = 2e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||| || || ||||| || |||||||| ||| ||| | ||| | || | ||| Sbjct 8026 CTTACCGGTAAAACAATTACGCTGGAGGTTGAATCATCTGACACCATCGACAACGTCAAG 7967 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || ||||| ||||||||||| || ||||| ||||| || || ||||| || |||||||| Sbjct 7966 GCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATCTTTGCTGGG 7907 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || ||| | || |||| ||| || || || || || ||| ||||||||||||| |||||| Sbjct 7906 AAACAATTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAAAAGGAATCAACTCTT 7847 Query 27607 CATCTAGT 27614 ||||| || Sbjct 7846 CATCTTGT 7839 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||| ||||||||||| | || || || || ||| | || | ||| | ||| Sbjct 7740 CTCACCGGTAAGACTATTACCTTGGAAGTCGAATCGTCTGACACAATCGACAATGTCAAG 7681 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || |||||||||||||||||||| || || || || || || ||||| ||||| || || Sbjct 7680 GCAAAAATTCAGGACAAGGAGGGTATCCCACCTGATCAACAACGTCTTATTTTCGCCGGG 7621 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || || || || || | ||||| ||||| ||||| ||| | |||||||| ||||| || Sbjct 7620 AAACAGCTGGAAGACGGACGTACGCTAGCTGACTACAATATTCAAAAGGAGTCCACCCTA 7561 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| | || ||||||||||| ||||| Sbjct 7560 CATTTGGTATTGCGTCTTCGTGGTGG 7535 Score = 131 bits (144), Expect = 2e-25 Identities = 126/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 |||| ||| | ||||| |||||||| || ||||| || ||||| || ||||| || || Sbjct 7408 ATTGACAATGTCAAGGCCAAAATTCAAGATAAGGAAGGGATTCCACCGGACCAACAACGA 7349 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 | ||||| ||||| |||||| | ||||||| ||| || || || || || ||| |||| Sbjct 7348 TTGATTTTCGCTGGAAAGCAATTGGAGGATGGTCGCACACTTGCGGATTACAATATCCAG 7289 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||| ||||||||||| || | ||||| || |||||| Sbjct 7288 AAGGAATCAACTCTTCATCTTGTGCTCCGTCTACGTGGTGGA 7247 >seq13718 Length=8986 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600 || ||||||||||| ||||| | ||| ||||| || ||||| || |||| ||||| || Sbjct 2904 GCCGGTAAGCAACTTGAGGACGGTCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCG 2845 Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||| | |||||||||||||| ||||| Sbjct 2844 ACTCTTCATTTGGTCTTGCGTCTTCGTGGTGG 2813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570209005939760