Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7247 149 5e-31 >seq7247 Length=24577 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27008 TCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAA 27067 ||| ||||| ||| ||||||| | ||||| ||| |||| ||| | || || | ||||| Sbjct 7741 TCTCACCGGTAAGACTATTACCTTGGAAGTCGAATCGTCTGACACAATCGACAATGTCAA 7682 Query 27068 ACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127 ||||||||| ||||| || || || ||||| |||||||| ||| | || | |||||| Sbjct 7681 GGCAAAAATTCAGGACAAGGAGGGTATCCCACCTGATCAACAACGTCTTATTTTCGCCGG 7622 Query 27128 CAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTT 27187 ||||| |||||||| | || | | || ||||| |||||||||||||| ||| | Sbjct 7621 GAAACAGCTGGAAGACGGACGTACGCTAGCTGACTACAATATTCAAAAGGAGTCCACCCT 7562 Query 27188 ACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| |||||| | || ||||| || Sbjct 7561 ACATTTGGTATTGCGTCTTCGTGGTGGTAT 7532 Score = 131 bits (144), Expect = 1e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| |||||| | || || || ||||| || | || || | ||||| | ||||| Sbjct 7163 TGACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAACGTCAAGG 7104 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || |||||||| || |||||||| ||||| || |||||||| |||| | || || | Sbjct 7103 CCAAGATTCAAGATAAGGAAGGCATCCCACCAGACCAACAGCGACTAATCTTTGCAGGTA 7044 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 |||||||||| || | || || ||||||||||||||||||||||||| || | | Sbjct 7043 AACAATTGGAGGATGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTTC 6984 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGG 27214 | ||||| ||||| |||| ||||| Sbjct 6983 ACTTGGTCTTGCGACTGCGTGGTGG 6959 Score = 114 bits (126), Expect = 1e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 |||| || ||| | || ||||| ||||| ||| | |||||| | ||||| | ||||| Sbjct 8312 TGACTGGTAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGG 8253 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || |||||||||||||| || || || || |||||||| ||| | || | || || | Sbjct 8252 CCAAGATTCAAGACAAAGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCTGGGA 8193 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | ||| | |||||| || || | | || ||||||||||| || ||||| || | | Sbjct 8192 AGCAACTTGAAGACGGTCGCACTCTCGCTGACTACAACATTCAGAAAGAGTCTACTCTCC 8133 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | |||||| | ||| | || ||||| || Sbjct 8132 ACTTGGTTCTTCGTCTTCGTGGTGGTAT 8105 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27008 TCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAA 27067 ||| ||||||||| | || || || || || ||| | ||||| | ||||| | || || Sbjct 8606 TCTTACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTGAA 8547 Query 27068 ACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127 || |||||||| |||||||| || ||||| || || || ||| | || | ||||| Sbjct 8546 GGCCAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAGCAACGTCTTATCTTTGCCGG 8487 Query 27128 CAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTT 27187 |||||| | ||||| | ||| | ||||||||||||| || ||||| || || | Sbjct 8486 AAAACAACTCGAAGATGGACGTACCCTGGCCGATTACAACATCCAGAAGGAATCCACTCT 8427 Query 27188 ACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| | ||| |||| ||||| || Sbjct 8426 TCATTTGGTACTTCGTCTGCGTGGTGGTAT 8397 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27008 TCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAA 27067 ||| ||||| || | ||||| || || || ||| | || ||| | || || | ||||| Sbjct 8027 TCTTACCGGTAAAACAATTACGCTGGAGGTTGAATCATCTGACACCATCGACAACGTCAA 7968 Query 27068 ACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127 ||||| || ||||| |||||||| || || |||||||| ||| | || | || || Sbjct 7967 GGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATCTTTGCTGG 7908 Query 27128 CAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTT 27187 |||||||||||||| || || | | |||||||| || |||||||| || || | Sbjct 7907 GAAACAATTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAAAAGGAATCAACTCT 7848 Query 27188 ACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | || | || ||||| || ||||| Sbjct 7847 TCATCTTGTGCTCCGATTGCGTGGAGGCAT 7818 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 ||||| || || | || || || ||||| ||| | || ||| | ||||| | ||||| Sbjct 7453 CTGACTGGTAAAACAATCACACTGGAAGTCGAATCTTCGGACACTATTGACAATGTCAAG 7394 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 ||||||||||| || ||||| || ||||| || ||||| || || || | ||| || Sbjct 7393 GCCAAAATTCAAGATAAGGAAGGGATTCCACCGGACCAACAACGATTGATTTTCGCTGGA 7334 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || |||||||| || || || || | |||||||| || || ||||| || || | Sbjct 7333 AAGCAATTGGAGGATGGTCGCACACTTGCGGATTACAATATCCAGAAGGAATCAACTCTT 7274 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | || | ||| | || ||||| || Sbjct 7273 CATCTTGTGCTCCGTCTACGTGGTGGAAT 7245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434841076944960