Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq7247 149 1e-30 seq13718 93.3 1e-13 >seq7247 Length=24577 Score = 149 bits (164), Expect = 1e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| | || || ||||| |||||||| || || |||||||| || ||||| || || Sbjct 7823 TCCACGCAATCGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGCGAG 7882 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | |||||||||| || || || || ||||| || |||||||| || || |||| Sbjct 7883 TGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGGGGAAT 7942 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||||||||| || || ||||| |||||||||||||| ||||||||| Sbjct 7943 GCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGATGATTCAACCTC 8002 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || || || || || ||| Sbjct 8003 CAGCGTAATTGTTTTACCGGTAAGA 8027 Score = 145 bits (160), Expect = 2e-29 Identities = 142/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||||||||| || || |||||||| ||||| || ||||| | ||||||||| || || Sbjct 8424 TGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGGGTACGTCCATCTTCGAGTTGT 8483 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || |||||||| ||||| ||||| || |||| ||||| || || || ||||| Sbjct 8484 TTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTTG 8543 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| || || ||||| || || |||||||||||| ||||| ||||| || || Sbjct 8544 GCCTTCACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTGCCGGTA 8603 Query 211092 AGA 211094 ||| Sbjct 8604 AGA 8606 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| ||||| |||||||| || ||||| || || || || || Sbjct 8113 ACGAAGACGAAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCGAGAGT 8172 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || ||||| || ||||| || || |||||||| |||||||| |||||||| | || Sbjct 8173 GCGACCGTCTTCAAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGGAGGGATACC 8232 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || ||||| || ||||| || || || || || ||||| ||| ||| || ||||| Sbjct 8233 CTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGACTTCGAG 8292 Query 211073 AGTGATCGTCTTTCCCGT 211090 |||||| ||||| || || Sbjct 8293 AGTGATGGTCTTACCAGT 8310 Score = 127 bits (140), Expect = 5e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || |||||||| ||||| || || || || || || || | ||| ||||||||||| Sbjct 7559 TGTAGGGTGGACTCCTTTTGAATATTGTAGTCAGCTAGCGTACGTCCGTCTTCCAGCTGT 7618 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || ||||| ||||| |||||||| ||||| || | || ||||||||||| || ||| Sbjct 7619 TTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGGGATACCCTCCTTGTCCTGAATTTTT 7678 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || ||||| |||||||| ||| || || | || || ||||| || ||| Sbjct 7679 GCCTTGACATTGTCGATTGTGTCAGACGATTCGACTTCCAAGGTAATAGTCTTACCGGTG 7738 Query 211092 AGA 211094 ||| Sbjct 7739 AGA 7741 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| |||||||| || || || ||||| || ||||||||||| || | ||||| Sbjct 7263 AGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACCATCC 7322 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || ||||| || | ||||||||||| || |||| |||||||| || Sbjct 7323 TCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCCGGTGGAATCCCTTCCTTATCT 7382 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || || || || || ||||| || ||| || || || ||||| || Sbjct 7383 TGAATTTTGGCCTTGACATTGTCAATAGTGTCCGAAGATTCGACTTCCAGTGTGATTGTT 7442 Query 211083 TTTCCCGTGAG 211093 || || || || Sbjct 7443 TTACCAGTCAG 7453 >seq13718 Length=8986 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 210982 AGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGT 211041 ||||||| ||||||||||| || |||| |||||||| || || ||||| ||||| | Sbjct 2975 AGATAAGTCGTTGTTGGTCTGGTGGAATGCCTTCCTTTTCTTGAATCTTGGTCTTCACAT 3034 Query 211042 TTTCGATGGTGTCAG-AGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 | || || ||||| | ||| ||| |||||||| ||||| ||||| |||||||| Sbjct 3035 TGTCAATTGTGTCGGCAGC-TTCGACCTCGAGGGTGATGGTCTTACCCGTGAG 3086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158940765195395