Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq7247 109 4e-19 >seq7247 Length=24577 Score = 109 bits (120), Expect = 4e-19 Identities = 138/187 (74%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693 || || || || |||||||||||||| || ||| | ||||| |||| ||| | || | Sbjct 8310 ACTGGTAAGACCATCACTCTCGAAGTCGAATCCTCCGACACAATTGACAATGTCAAGGC- 8252 Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753 || ||| |||||||| ||| | || || |||||||| ||| | || ||||| || || Sbjct 8251 CAAGATTCAAGACAAAGAGGGTATCCCTCCTGATCAACAACGTCTTATCTTTGCTGGGAA 8192 Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 ||||| ||||||| |||||| | | || |||||||| || |||||||| || | || Sbjct 8191 GCAACTTGAAGACGGTCGCACTCTCGCTGACTACAACATTCAGAAAGAGTCTACTCTCCA 8132 Query 23814 TTTAGTT 23820 || ||| Sbjct 8131 CTTGGTT 8125 Score = 100 bits (110), Expect = 2e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAA 23690 || || || || || ||||| ||||| ||||| || | || || |||| ||| | || Sbjct 8605 CTTACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTGAAG 8546 Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750 | || | || || ||||||||| | || ||||| || || ||| | || |||||||| Sbjct 8545 GCCAAGA-TTCAAGATAAAGAAGGTATTCCACCAGACCAGCAACGTCTTATCTTTGCCGG 8487 Query 23751 CAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATT 23810 |||||||| ||||| | ||| || | | |||||||||||| || || || ||||| | Sbjct 8486 AAAACAACTCGAAGATGGACGTACCCTGGCCGATTACAACATCCAGAAGGAATCCACTCT 8427 Query 23811 ACATTTAGT 23819 ||||| || Sbjct 8426 TCATTTGGT 8418 Score = 87.8 bits (96), Expect = 1e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || || || ||||| |||||||| || || |||| || |||| | | || Sbjct 7161 ACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAACGTCAAGGCC 7102 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || ||| || || ||||| | || ||||| |||||||| |||| ||||| || ||| Sbjct 7101 AAGATTCAAGATAAGGAAGGCATCCCACCAGACCAACAGCGACTAATCTTTGCAGGTAAA 7042 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 ||| |||| || | || || | | |||||||||||| ||||| ||||| || Sbjct 7041 CAATTGGAGGATGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTAC 6989 Score = 84.2 bits (92), Expect = 1e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAA 23691 || || || ||||| || || || || ||||| || | ||||| | || | | || Sbjct 8026 CTTACCGGTAAAACAATTACGCTGGAGGTTGAATCATCTGACACCATCGACAACGTCAAG 7967 Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751 ||||| ||||| ||||| | || ||||||||||| ||| | || ||||| || Sbjct 7966 GCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATCTTTGCTGGG 7907 Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTA 23811 |||||| ||||||| | ||||| | | |||||||| || ||||| || || || | Sbjct 7906 AAACAATTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAAAAGGAATCAACTCTT 7847 Query 23812 CATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| | || | | ||||| ||||| Sbjct 7846 CATCTTGTGCTCCGATTGCGTGGAGG 7821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337951008465284