Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7247 140 8e-28 seq3449 98.7 2e-15 seq13718 89.7 1e-12 >seq7247 Length=24577 Score = 140 bits (154), Expect = 8e-28 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||||||| || ||||| || | ||||| || || | ||| Sbjct 8113 ACGAAGACGAAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCAGCGAGAGT 8172 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| || ||||||||||| |||||||| |||||||| || || || ||||| Sbjct 8173 GCGACCGTCTTCAAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGGAGGGATACC 8232 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||||| ||||| ||| ||| || || ||||| |||| ||| || || | Sbjct 8233 CTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGACTTCGAG 8292 Query 225672 CGTGATCGTCTTGCCCGTCAAA 225693 ||||| ||||| || |||||| Sbjct 8293 AGTGATGGTCTTACCAGTCAAA 8314 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||||||||| || |||| ||||||||||||| || | |||||||| || || Sbjct 8424 TGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGGGTACGTCCATCTTCGAGTTGT 8483 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || |||||||| ||||| ||||| || ||||||||||| || ||||| ||||| Sbjct 8484 TTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCTTCTTTATCTTGAATCTTG 8543 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||||| || ||||| || || | ||| || || | ||||| |||||||| || Sbjct 8544 GCCTTCACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTGCCGGT 8602 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || ||||| ||||| ||||||| ||||||||| || | || | |||||| Sbjct 7836 AGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGCGAGTGTGCGACCATCT 7895 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || |||||||| ||||| || |||||||| || || ||||| ||||||||||| Sbjct 7896 TCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGGGGAATGCCTTCCTTGTCC 7955 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || ||||||||||| || | ||| || || | ||| || || Sbjct 7956 TGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGATGATTCAACCTCCAGCGTAATTGTT 8015 Query 225682 TTGCCCGT 225689 || || || Sbjct 8016 TTACCGGT 8023 Score = 122 bits (134), Expect = 2e-22 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || ||| | ||| ||||| || || ||||| | ||||||||||| | || Sbjct 6964 ACGCAGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGT 7023 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||| || | || || || || ||||| ||||| |||||||| || || || || Sbjct 7024 TCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGGGATGCC 7083 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| ||||| ||||| ||| || || || || || || | || || || | Sbjct 7084 TTCCTTATCTTGAATCTTGGCCTTGACGTTGTCAATTGTATCCGATGACTCGACTTCGAG 7143 Query 225672 CGTGATCGTCTTGCCCGTCAAA 225693 ||||| |||||||| |||||| Sbjct 7144 GGTGATGGTCTTGCCAGTCAAA 7165 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || ||||| ||||| || |||| ||||||||| || | || | ||||| Sbjct 7263 AGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACCATCC 7322 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| |||||||| || | |||||||||||| || ||||| |||||||| ||| Sbjct 7323 TCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCCGGTGGAATCCCTTCCTTATCT 7382 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| ||| || || ||||| || | ||| || || | ||||| || Sbjct 7383 TGAATTTTGGCCTTGACATTGTCAATAGTGTCCGAAGATTCGACTTCCAGTGTGATTGTT 7442 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 7443 TTACCAGTCA 7452 >seq3449 Length=657 Score = 98.7 bits (108), Expect = 2e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| |||||||||||| | | |||||||| ||||| || Sbjct 592 TTCTGGATGACCAAAAAATCAAAATAAATGTTGAAATAAAATAGGATCTCCTCCTCCATT 533 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||| |||||| ||||||||||||| ||| ||||| Sbjct 532 TGGATTAAAAAATGAGGTATTAAAATTTCGATCTGTTAA 494 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||| | || || ||||| || |||| ||||| ||| | ||||| Sbjct 20 CAAATTTATAATTCTATTGTAACAGCTCATGCTTTAATTATAATTTTTTTTATAGTTATA 79 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| |||| |||| | || |||| Sbjct 80 CCAATTATAATTGGTGGATTTGGAAATTGATTAATTCCAATAATTTTATTATCTTGTGAT 139 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 || || |||||| | | || |||||||| ||||||||| || Sbjct 140 ATAGCATTTCCACGAATAAATAATATAAGATTTTGATTATTA 181 >seq13718 Length=8986 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 225581 AGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAG 225640 ||||||||||||||||||| || ||||| |||||||| ||||| ||||| ||||||| Sbjct 2975 AGATAAGTCGTTGTTGGTCTGGTGGAATGCCTTCCTTTTCTTGAATCTTGGTCTTCACAT 3034 Query 225641 CTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || ||||| | | ||| || || | ||||| ||||| ||||| Sbjct 3035 TGTCAATTGTGTCGGCAGCTTCGACCTCGAGGGTGATGGTCTTACCCGT 3083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192313882430762