Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11248 98.7 1e-15 seq12155 84.2 3e-11 >seq11248 Length=18918 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCA 48521 ||||| || || || || |||| ||||| | || ||||| || |||| |||| Sbjct 4585 ATCTGGAAGCCATAGAAGCATCGAGCTTCAGCCGCTTGAACCTCTCCACTGAATCTTTCA 4526 Query 48522 GCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATA 48581 ||| || || || || |||||||| ||||||||| || |||| |||||||| ||| Sbjct 4525 ATCAAGTTTTCGTTGACAATTCCATCCGAAGCAGCAAAGAAAGCTAGGACATGTTTGATA 4466 Query 48582 AAATATTTTTCGTTGGAAGTCAGTTTATTC---CAGTCATTGATATCTTTTGATATATCT 48638 || | ||| || | | ||| | | ||| || || | ||||| || || | ||| Sbjct 4465 AAGTGTTTCTCATCATCATTCAATCTGTTCTCCCAATCGTGCATATCCTTCGAAAGATCG 4406 Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671 | |||||| |||||||||||||| ||||| ||| Sbjct 4405 ATTTCTTCGGCTGTCCAAAATGAAGCCTCGGCT 4373 >seq12155 Length=30793 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/194 (70%), Gaps = 9/194 (5%) Strand=Plus/Plus Query 77994 TCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 78053 |||||| |||| |||||||| | ||| || |||||||| || || || || || Sbjct 29071 TCTTCC---ACTCTCTTCATAAATAAATCTGGAATCCATAGCGCGTAGAAAAGGTCACGT 29127 Query 78054 GTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAG---ATCGAGAAACTCCATAATATCA 78110 | |||| |||||| ||||| || |||||| | |||||| | || | | ||| Sbjct 29128 GCTCTACTTTCTTCTTTTCC---ATGATTTTTACGTAAATCGAGCCAATCGAATACATCT 29184 Query 78111 GAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCT 78170 | |||||||| || | || ||||| | | | || |||| ||| || || |||||||| Sbjct 29185 GCGTGCCATGGCTCAATGTAGATTGCGAAAGCACCTGGTCTTTTGTTCCCGCCCTGATCA 29244 Query 78171 ATATATCTGGCGGT 78184 | ||||||||||| Sbjct 29245 ACGTATCTGGCGGT 29258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694545296570720