Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq7247 104 5e-17 >seq7247 Length=24577 Score = 104 bits (114), Expect = 5e-17 Identities = 134/184 (73%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||||||||| ||||| |||||||||||||| | |||| |||||| || | Sbjct 6979 CAAG-TGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGCAAGTGTTCGCCCATCCTCCA 7037 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| || || ||||| || | ||| ||||| | | ||| |||||||| ||||||| Sbjct 7038 ATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGGGATGCCTTCCTTATCTTGAA 7097 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | | || || ||| ||||| || || || || |||| Sbjct 7098 TCTTGGCCTTGACGTTGTCAATTGTATCCGATGACTCGACTTCGAGGGTGATGGTCTTGC 7157 Query 152077 CCGT 152080 | || Sbjct 7158 CAGT 7161 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||| || || || ||||||||||||||||| | || | |||||| Sbjct 8415 AGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGGGTACGTCCATCT 8474 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| |||||||| | |||||||| | | || ||||| || ||| Sbjct 8475 TCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCTTCTTTATCT 8534 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | | || ||| || || || || || || || Sbjct 8535 TGAATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTC 8594 Query 152073 TTGCCCGTGAGA 152084 ||||| || ||| Sbjct 8595 TTGCCGGTAAGA 8606 Score = 93.3 bits (102), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| |||||||||||||| || || || ||||| |||||||| || | || | ||||| Sbjct 7262 GAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACCATC 7321 Query 151952 TTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || | ||||| || ||||| || | | || ||||||| | || |||||||| Sbjct 7322 CTCCAATTGCTTT--CCAGCGAAAATCAATCGTTGTTGGTCCGGTGGAATCCCTTCCTTA 7379 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||||||||| |||||| | || | |||| ||| || ||||| || || || Sbjct 7380 TCTTGAATTTTGGCCTTGACATTGTCAATAGTGTCCGAAGATTCGACTTCCAGTGTGATT 7439 Query 152070 GTTTTGCCCGTGAG 152083 ||||| || || || Sbjct 7440 GTTTTACCAGTCAG 7453 Score = 93.3 bits (102), Expect = 1e-13 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| || || ||||| ||||| || ||||| || |||| || | || ||||| || Sbjct 7558 ATGTAGGGTGGACTCCTTTTGAATATTGTAGTCAGCTAGCGTACGTCCGTCTTCCAGCTG 7617 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 |||||||||||| ||||| | || || || | | ||| || ||||| || |||||||| Sbjct 7618 TTTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGGGATACCCTCCTTGTCCTGAATTTT 7677 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 | |||||| | || | |||| || || ||||| | |||||||| || || || Sbjct 7678 TGCCTTGACATTGTCGATTGTGTCAGACGATTCGACTTCCAAGGTAATAGTCTTACCGGT 7737 Query 152081 GAGA 152084 |||| Sbjct 7738 GAGA 7741 Score = 93.3 bits (102), Expect = 1e-13 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 || ||| |||||||||||||| || || |||||||| |||||||| || | || | || Sbjct 7832 TCGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGTAATCAGCGAGTGTGCGACC 7891 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| | |||||| || ||||| || | || || || | | || |||||||| Sbjct 7892 ATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATCTGGGGGAATGCCTTCCTT 7951 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 || || ||||| ||||| | || | | |||| || || || || || ||||| Sbjct 7952 GTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGATGATTCAACCTCCAGCGTAAT 8011 Query 152069 AGTTTTGCCCGTGAGA 152084 ||||| || || ||| Sbjct 8012 TGTTTTACCGGTAAGA 8027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153610536711633