Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq7247 178 3e-39 seq13718 84.2 5e-11 >seq7247 Length=24577 Score = 178 bits (196), Expect = 3e-39 Identities = 164/208 (79%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| || | || ||||| || |||||||||||||| Sbjct 8107 ACCACCACGAAGACGAAGAACCAAGTGGAGAGTAGACTCTTTCTGAATGTTGTAGTCAGC 8166 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || || || ||||| ||||| |||||||| | ||||||||| ||| || Sbjct 8167 GAGAGTGCGACCGTCTTCAAGTTGCTTCCCAGCAAAGATAAGACGTTGTTGATCAGGAGG 8226 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||| |||||||| ||||| || || || | || || ||||| || | |||||| Sbjct 8227 GATACCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCAATTGTGTCGGAGGATTCGAC 8286 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAA 283079 |||||||||||| |||||||| |||||| Sbjct 8287 TTCGAGAGTGATGGTCTTACCAGTCAAA 8314 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| |||||||||| ||| | ||| ||| || ||||||||||| || || Sbjct 8399 ACCACCACGCAGACGAAGTACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGC 8458 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || |||||||| ||||||||||| | |||||| ||||| || Sbjct 8459 CAGGGTACGTCCATCTTCGAGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGG 8518 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || || ||||| ||||| || || || | || || || || |||| ||| || Sbjct 8519 AATACCTTCTTTATCTTGAATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTCAAC 8578 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| || || Sbjct 8579 CTCGAGGGTGATGGTCTTGCCGGT 8602 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | ||||| ||||| ||| || ||||| || ||||||||||| Sbjct 7534 ACCACCACGAAGACGCAATACCAAATGTAGGGTGGACTCCTTTTGAATATTGTAGTCAGC 7593 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| || || || || || ||||||||||| || || | ||||||||| ||| || Sbjct 7594 TAGCGTACGTCCGTCTTCCAGCTGTTTCCCGGCGAAAATAAGACGTTGTTGATCAGGTGG 7653 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| || || ||||| || || | ||||| ||||| || | |||||| Sbjct 7654 GATACCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCGATTGTGTCAGACGATTCGAC 7713 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||| | || || |||||||| || Sbjct 7714 TTCCAAGGTAATAGTCTTACCGGT 7737 Score = 154 bits (170), Expect = 3e-32 Identities = 157/205 (77%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || ||||| | || ||| || ||||| ||||| || ||| Sbjct 7248 CCACCACGTAGACGGAGCACAAGATGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCA 7307 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| |||||||| | ||| || || || || ||||| ||||||||||| ||| Sbjct 7308 AGTGTGCGACCATCCTCCAATTGCTTTCCAGCGAAAATCAATCGTTGTTGGTCCGGTGGA 7367 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||| || || || || || | || ||||||||||||| ||||||| Sbjct 7368 ATCCCTTCCTTATCTTGAATTTTGGCCTTGACATTGTCAATAGTGTCCGAAGATTCGACT 7427 Query 283053 TCGAGAGTGATCGTCTTACCCGTCA 283077 || || ||||| || ||||| |||| Sbjct 7428 TCCAGTGTGATTGTTTTACCAGTCA 7452 Score = 141 bits (156), Expect = 2e-28 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || | |||| || | || || ||||| |||||||| || || Sbjct 6958 ACCACCACGCAGTCGCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAATCGGC 7017 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| | |||||| || |||||||| | || |||||||| || Sbjct 7018 AAGTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGATTAGTCGCTGTTGGTCTGGTGG 7077 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||| ||||| ||||| || || ||| | || || || ||||| | ||||| Sbjct 7078 GATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTGTCAATTGTATCCGATGACTCGAC 7137 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAA 283079 |||||| ||||| ||||| || |||||| Sbjct 7138 TTCGAGGGTGATGGTCTTGCCAGTCAAA 7165 Score = 98.7 bits (108), Expect = 2e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||||||||||||||||| ||| |||||||||||||| || ||||| || || ||| | Sbjct 8838 ATCAAACGTTGTTGGTCTGGCGGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG 8897 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 |||||||| || |||| ||| || ||||| ||||| || || || || Sbjct 8898 TCGATAGTATCGGAAGATTCAACCTCGAGGGTGATAGTTTTGCCGGT 8944 >seq13718 Length=8986 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 |||| | ||||||||||| ||||| || ||||| ||||| ||||| | || || Sbjct 2975 AGATAAGTCGTTGTTGGTCTGGTGGAATGCCTTCCTTTTCTTGAATCTTGGTCTTCACAT 3034 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | || || ||||| | ||||||||| ||||| ||||| ||||||||||| Sbjct 3035 TGTCAATTGTGTCGGCAGCTTCGACCTCGAGGGTGATGGTCTTACCCGT 3083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046548450425842