Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq7247 109 4e-19 >seq7247 Length=24577 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || || | ||| || ||||| || ||||||||||| ||||| Sbjct 7814 TTGCATGCCTCCACGCAATCGGAGCACAAGATGAAGAGTTGATTCCTTTTGGATATTGTA 7873 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| |||||| ||| | || |||| || ||||| |||||||||| ||| || ||||| Sbjct 7874 ATCAGCGAGTGTGCGACCATCTTCCAATTGTTTCCCAGCAAAGATCAGACGTTGTTGATC 7933 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | |||||||| ||| || || ||| | | | |||||||| | || Sbjct 7934 TGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTGTCGATGGTGTCAGATGA 7993 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 ||| ||||||| |||||| || || || || || Sbjct 7994 TTCAACCTCCAGCGTAATTGTTTTACCGGTAAG 8026 Score = 95.1 bits (104), Expect = 9e-15 Identities = 116/156 (74%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 44089 ATTACATGATTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTC 44148 ||||||||||| |||| | || || | ||||| ||| |||| |||||| || ||| Sbjct 6940 ATTACATGATTAC-ATTTGA--CCACCACGCAGTCGCAAGACCAAGTGAAGAGTAGACTC 6996 Query 44149 CTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGAT 44208 |||||| |||||||||||||| ||| ||| | || |||| || || || |||||||| Sbjct 6997 CTTTTGAATGTTGTAATCGGCAAGTGTTCGCCCATCCTCCAATTGTTTACCTGCAAAGAT 7056 Query 44209 CAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 | ||||| || |||| || | |||||||| || Sbjct 7057 TAGTCGCTGTTGGTCTGGTGGGATGCCTTCCTTATC 7092 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| ||| ||||| ||||||||||||||||| || || | || || Sbjct 8418 ACCAAATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCCAGGGTACGTCCATCTTCG 8477 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || ||||||||||| | ||| ||||| |||| || | |||||| || || Sbjct 8478 AGTTGTTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGAATACCTTCTTTATCTTGA 8537 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | ||||| |||| ||||| ||||| | || || ||||| Sbjct 8538 ATCTTGGCCTTCACATTGTCAATGGTATCGGAAGATTCAACCTCGAGGGTGATGGTCTTG 8597 Query 44309 CCCGTGAG 44316 || || || Sbjct 8598 CCGGTAAG 8605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359927998251591