Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20abietis- canadensis_20[genbank_20GCA_5F002157025.1_202017-05-22] 14,223 sequences; 74,050,440 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq7247 156 1e-32 seq13718 84.2 5e-11 >seq7247 Length=24577 Score = 156 bits (172), Expect = 1e-32 Identities = 145/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| || || || || |||||||||||||| ||| || || ||||| || || || || Sbjct 8606 TCTTACCGGCAAGACCATCACCCTCGAGGTTGAATCTTCCGATACCATTGACAATGTGAA 8547 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 |||||||| || |||||||| || || || ||||||||||| |||||||| ||||| Sbjct 8546 GGCCAAGATTCAAGATAAAGAAGGTATTCCACCAGACCAGCAACGTCTTATCTTTGCCGG 8487 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACT 178120 |||||| |||||||||||| | || || |||||||| ||| |||| || ||||| || || Sbjct 8486 AAAACAACTCGAAGATGGACGTACCCTGGCCGATTACAACATCCAGAAGGAATCCACTCT 8427 Query 178121 GCAT 178124 ||| Sbjct 8426 TCAT 8423 Score = 134 bits (148), Expect = 3e-26 Identities = 143/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 ||| || || ||||| || || || ||||| ||| || ||||||||||| |||||||| Sbjct 8027 TCTTACCGGTAAAACAATTACGCTGGAGGTTGAATCATCTGACACCATCGACAACGTCAA 7968 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 || || |||||||| ||||| || || || || || ||||| || ||||| || || Sbjct 7967 GGCCAAAATCCAGGACAAGGAAGGCATTCCCCCAGATCAACAACGTCTGATCTTTGCTGG 7908 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACT 178120 ||||| | |||||||| | || || || ||||| || ||||||| |||||||| || Sbjct 7907 GAAACAATTGGAAGATGGTCGCACACTCGCTGATTACAATATCCAAAAGGAATCAACTCT 7848 Query 178121 GCATCTTGT 178129 |||||||| Sbjct 7847 TCATCTTGT 7839 Score = 123 bits (136), Expect = 6e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 |||||| || || || || ||| | || || ||| || ||||| ||||| || ||||| Sbjct 7741 TCTCACCGGTAAGACTATTACCTTGGAAGTCGAATCGTCTGACACAATCGACAATGTCAA 7682 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060 ||| ||||||||||| || || ||||| || || || ||||| ||||| |||||||| Sbjct 7681 GGCAAAAATTCAGGACAAGGAGGGTATCCCACCTGATCAACAACGTCTTATTTTCGCCGG 7622 Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACT 178120 |||||||| ||||| ||| | || || || || || || | ||||| || || || || Sbjct 7621 GAAACAGCTGGAAGACGGACGTACGCTAGCTGACTACAATATTCAAAAGGAGTCCACCCT 7562 Query 178121 GCATCTTGTTTTG 178133 ||| | || ||| Sbjct 7561 ACATTTGGTATTG 7549 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||||||||| || || || || || || || |||||||| Sbjct 7161 ACTGGCAAGACCATCACCCTCGAAGTCGAGTCATCGGATACAATTGACAACGTCAAGGCC 7102 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| || || ||||| ||||| || ||||| || ||||| ||||| || || ||| Sbjct 7101 AAGATTCAAGATAAGGAAGGCATCCCACCAGACCAACAGCGACTAATCTTTGCAGGTAAA 7042 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || | || ||||| | || ||||||||||| ||| | ||||| || || || || || Sbjct 7041 CAATTGGAGGATGGGCGAACACTTGCCGATTACAACATTCAAAAGGAGTCTACTCTTCAC 6982 Query 178125 CTTGTTTTGAGACT 178138 | || ||| |||| Sbjct 6981 TTGGTCTTGCGACT 6968 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000 |||||| || ||||| |||||||||||||| ||| || || || ||||| |||||||| Sbjct 8948 TCTCACCGGCAAAACTATCACCCTCGAGGTTGAATCTTCCGATACTATCGACAACGTCAA 8889 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 |||||||||||||| || || ||||| || ||||| ||||| Sbjct 8888 GGCCAAGATTCAGGACAAGGAGGGTATCCCGCCAGACCAACAACG 8844 >seq13718 Length=8986 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCT-CAGACACCATCGAGAACGTCAA 178000 ||||| || || || |||||||||||||| ||| ||| | ||||| || || || || || Sbjct 3086 CTCACGGGTAAGACCATCACCCTCGAGGTCGAA-GCTGCCGACACAATTGACAATGTGAA 3028 Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCT 178053 |||||||| || || ||||| || || || ||||| ||||||||||||| Sbjct 3027 GACCAAGATTCAAGAAAAGGAAGGCATTCCACCAGACCAACAACGACTTATCT 2975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203511841430262