Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq20492 138 8e-28 >seq20492 Length=5790 Score = 138 bits (152), Expect = 8e-28 Identities = 240/345 (70%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 101867 ACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACA 101926 ||||||||||||| || | ||||||||| || | ||||||||| | || ||| | Sbjct 908 ACATAAAATTGACAAAACATATGACAAGGAGGAAGTGCCATTTTAGATAAATCAGAAGGA 849 Query 101927 TTCCAAGCACACATTAACATCCTTCTA---TCTGTAGGGTTTGTTTTTATAGTATCAATC 101983 |||||||||| |||| || ||||| || | || || || || ||| ||| Sbjct 848 TTCCAAGCAC---TTAAAATGATTCTACGATCAATTGGATTAAATTGAATTTTATGAATA 792 Query 101984 AACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCT 102043 ||| ||||||||| |||| |||| ||| | |||||| || | |||||||||| Sbjct 791 CACTCTTTTAATTGATCAATACCTTTTCCATGATAATCATCTTTAAAAGTTTTATATTCT 732 Query 102044 GCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCA 102103 || || ||||| ||||| ||||||||||| | ||||| ||||||||||| ||| || Sbjct 731 GCACCAAAATGTCTCCATTGAAATCCATAAATCGGTCCTAGATCTCCTTCTGATCTTTCT 672 Query 102104 TAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCA 102163 || || | | | |||| | | | ||||||||| ||| ||| || | ||| || Sbjct 671 GTTAATCCTATACTCTTTAAATAAGTTTGAGATCCATTTCCATTCCAGATATTCACTCCT 612 Query 102164 GCTGCTGATAGCTCT-TTGCTGTCAGTAGATCCTCTGATAAACCA 102207 || ||||| ||| || || || |||||| | |||||||| Sbjct 611 TTTGATGATAATTCTAGTGATG-AGGTTGATCCTTTTATAAACCA 568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361122529660475