Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05-
22] 29,225 sequences; 62,222,430 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq20492 138 8e-28
>seq20492
Length=5790
Score = 138 bits (152), Expect = 8e-28
Identities = 240/345 (70%), Gaps = 8/345 (2%)
Strand=Plus/Minus
Query 101867 ACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACA 101926
||||||||||||| || | ||||||||| || | ||||||||| | || ||| |
Sbjct 908 ACATAAAATTGACAAAACATATGACAAGGAGGAAGTGCCATTTTAGATAAATCAGAAGGA 849
Query 101927 TTCCAAGCACACATTAACATCCTTCTA---TCTGTAGGGTTTGTTTTTATAGTATCAATC 101983
|||||||||| |||| || ||||| || | || || || || ||| |||
Sbjct 848 TTCCAAGCAC---TTAAAATGATTCTACGATCAATTGGATTAAATTGAATTTTATGAATA 792
Query 101984 AACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCT 102043
||| ||||||||| |||| |||| ||| | |||||| || | ||||||||||
Sbjct 791 CACTCTTTTAATTGATCAATACCTTTTCCATGATAATCATCTTTAAAAGTTTTATATTCT 732
Query 102044 GCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCA 102103
|| || ||||| ||||| ||||||||||| | ||||| ||||||||||| ||| ||
Sbjct 731 GCACCAAAATGTCTCCATTGAAATCCATAAATCGGTCCTAGATCTCCTTCTGATCTTTCT 672
Query 102104 TAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCA 102163
|| || | | | |||| | | | ||||||||| ||| ||| || | ||| ||
Sbjct 671 GTTAATCCTATACTCTTTAAATAAGTTTGAGATCCATTTCCATTCCAGATATTCACTCCT 612
Query 102164 GCTGCTGATAGCTCT-TTGCTGTCAGTAGATCCTCTGATAAACCA 102207
|| ||||| ||| || || || |||||| | ||||||||
Sbjct 611 TTTGATGATAATTCTAGTGATG-AGGTTGATCCTTTTATAAACCA 568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361122529660475
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |