Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq24802 104 3e-17 >seq24802 Length=2283 Score = 104 bits (114), Expect = 3e-17 Identities = 245/367 (67%), Gaps = 6/367 (2%) Strand=Plus/Plus Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 ||| ||| | || |||||||||| ||| | | || |||||| | ||| |||| Sbjct 1806 CGTGATAGAGCGTCTCGAAGATCTGAGCATTCAATTTTTTGGCTTCCGGTGAATCGAATG 1865 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 || || |||| ||| || ||||||||||| | || || || ||||| || | || Sbjct 1866 GAAGCTTCAAGATTTGAAAGGCATCTGCTAATCCGTTTACTCCGATTCCGATGGGACGAT 1925 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 ||||| | || || ||| ||||||||| | || || ||||| | |||||| || || Sbjct 1926 GTCTCATGTTGGACTTTTTAGCTTCTGGGACGGGGTAGTAATTCACATCTATTATACGAT 1985 Query 53625 TGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTC 53681 | | ||| | |||| || ||| | ||| || | || || | |||||| | || Sbjct 1986 TCAAGTTCCACGTGAC--TTCCTTCG-TCACCTCGTGTAGCTTTTGGAAATCATAGACTC 2042 Query 53682 CATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAG 53741 | || | | | || | || || || || ||||| |||||||| || ||||||| | Sbjct 2043 CGTCGGTGATATACGTCGGCAGCGCGATCGAGGCCAGGTTACAAACCGCCACCTCATCTG 2102 Query 53742 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 53801 | | ||| | || |||||||| ||||| || |||||||||| || | || | Sbjct 2103 GGGCTGAATACTCGATGATCTCAGTACAAAGGTTCGATGACTTGATGGTGCCAAGGTTCT 2162 Query 53802 GTTGATT 53808 |||||| Sbjct 2163 TTTGATT 2169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593504706078000