Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq20492 140 2e-28 >seq20492 Length=5790 Score = 140 bits (154), Expect = 2e-28 Identities = 243/351 (69%), Gaps = 2/351 (1%) Strand=Plus/Minus Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 |||||||| |||| || | |||||| || || | |||||||| | | ||| | | Sbjct 908 ACATAAAATTGACAAAACATATGACAAGGAGGAAGTGCCATTTTAGATAAATCAGAAGGA 849 Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATC 97350 |||||||||| | | ||||| | ||| |||| || || || ||| ||| | Sbjct 848 TTCCAAGCACTTAAAATGATTCTACGATCAATTGGATTAAATTGAATTTTATGAATACAC 789 Query 97351 TGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCT 97410 | ||||||||||||| |||| |||| ||||| | |||| | || ||||||||| Sbjct 788 TCTTTTAATTGATCAATACCTTTTCCATGATAATCATCTTTAAAAGTTTTATATTCTGCA 729 Query 97411 CCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAG 97470 |||||||| |||||||| |||||||||| ||||| || ||||||||| ||| || Sbjct 728 CCAAAATGTCTCCATTGAAATCCATAAATCGGTCCTAGATCTCCTTCTGATCTTTCTGTT 669 Query 97471 AAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGAT 97530 || || | | | |||||| | |||||||||| ||| ||| || | ||| || | Sbjct 668 AATCCTATACTCTTTAAATAAGTTTGAGATCCATTTCCATTCCAGATATTCACTCCTTTT 609 Query 97531 GCTGCAAGCTCT-TTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTC 97580 | || | ||| || || || |||||| | |||||||| | ||||| Sbjct 608 GATGATAATTCTAGTGATG-AGGTTGATCCTTTTATAAACCATAGTAATTC 559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346660482583250