Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq20492 109 8e-19 >seq20492 Length=5790 Score = 109 bits (120), Expect = 8e-19 Identities = 245/359 (68%), Gaps = 18/359 (5%) Strand=Plus/Minus Query 205561 ACATGAAATTGTACAAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGG 205619 |||| |||||| |||||||| ||||||||| || | |||| || | ||| ||| Sbjct 908 ACATAAAATTG-ACAAAACATATGACAAGGAGGAAGTGCCATTTTAGATAAATCAGAAGG 850 Query 205620 ATTCCAGGCTGTTAATATTATATTTCTAGATTCA---GGtttattttttattttatttat 205676 |||||| || |||| || || |||| ||| || ||| || ||||||| || Sbjct 849 ATTCCAAGCACTTAAAATGAT---TCTACGATCAATTGGATTAAATTGAATTTTATGAAT 793 Query 205677 AATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAAT---ATA 205733 | | | |||||||||||| |||| || || || ||| || | | ||| Sbjct 792 ACACTCTTTTAATTGATCAATACCTT---TTCCATGATAATCATCTTTAAAAGTTTTATA 736 Query 205734 TTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCT 205793 || ||||||||||| | ||||||||| ||||||| || |||| ||| |||||| ||| Sbjct 735 TTCTGCACCAAAATGTCTCCATTGAAATCCATAAATCGGTCCTAGATCTCCTTCTGATCT 676 Query 205794 ATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggat 205853 || | || || | |||| ||| || ||||||||| ||| ||| |||| | Sbjct 675 TTCTGTTAATCCTATACTCTTTAAATAAGTTTGAGATCCATTTCCATTCCAGATATTCAC 616 Query 205854 tcctttattttttaGAATATTTGT-ATTA-GTTGATCCAGATATAAACCATAATAATTC 205910 ||||| || | | ||| | || || | |||||||| ||||||||||| |||||| Sbjct 615 TCCTT--TTGATGATAATTCTAGTGATGAGGTTGATCCTTTTATAAACCATAGTAATTC 559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755180022480000