Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq20492 91.5 3e-13 >seq20492 Length=5790 Score = 91.5 bits (100), Expect = 3e-13 Identities = 197/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392 |||||||| | ||||| || | | ||| | |||| ||| ||| || ||| || Sbjct 622 ATCTGGAATGGAAATGGATCTCAAACTTATTTAAAGAGTATAGGATTAACAGAAAGATCA 681 Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 || |||||| | ||||| | || ||||| |||||| | ||||||||||| |||||| | Sbjct 682 GAAGGAGATCTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATAAA 741 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATT-GGCCAATATACTAAAGAC 35511 || | | |||||| |||||| |||||||||||||| | | || | | | Sbjct 742 ACTTTTAAAGATGATTATCATGGAAAAGGTATTGATCAATTAAAAGAGTGTATTCATAAA 801 Query 35512 CCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCT 35571 | | | |||||| |||| | || || ||| | | || ||||||||| || | Sbjct 802 ATTCA-ATTTAATCCAATTGATCGTAGAATCATTTTAAGTGCTTGGAATCCTTCTGA--T 858 Query 35572 TCACCT--TATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 | | || ||||| |||||||| || || ||| | |||||||||||| Sbjct 859 TTATCTAAAATGGCACTTCCTCCTTGTCATATGTTTTGTCAATTTTATGT 908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989213454909875