Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05-
22] 29,225 sequences; 62,222,430 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq20492 141 1e-28
seq8761 95.1 1e-14
>seq20492
Length=5790
Score = 141 bits (156), Expect = 1e-28
Identities = 248/353 (70%), Gaps = 16/353 (5%)
Strand=Plus/Minus
Query 7004 TAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCC---TGATCTATATCAG 7060
|| ||||||||||||| || | |||||| ||||| || ||| | | || |||||
Sbjct 910 TAACATAAAATTGACAAAACATATGACAAGGAGG---AAGTGCCATTTTAGATAAATCAG 854
Query 7061 ATGGATTCCAAGCAGTCATTAAAATACGTCTA---TCATTTGGATTTGTTTTTAATTTTG 7117
| |||||||||||| | |||||| |||| ||| ||||||| || ||||||
Sbjct 853 AAGGATTCCAAGCACT---TAAAATGATTCTACGATCAATTGGATTAAATTG-AATTTTA 798
Query 7118 TTA-TA-ATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTAT 7175
| | || | | ||| ||||||||| ||||| | || | ||||| | | | || || |
Sbjct 797 TGAATACACTCTTT-TAATTGATCAATACCTTTTCCATGATAATCATCTTTAAAAGTTTT 739
Query 7176 ATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTC 7235
||| | || |||||||||||||||||||| |||||||| || |||| ||| ||||||
Sbjct 738 ATATTCTGCACCAAAATGTCTCCATTGAAATCCATAAATCGGTCCTAGATCTCCTTCTGA 679
Query 7236 ACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCCCAAATATG 7295
| | | ||||||| | ||||||| || || ||||||| ||| ||| ||||
Sbjct 678 TCTTTCTGTTAATCCTATACTCTTTAAATAAGTTTGAGATCCATTTCCATTCCAGATATT 619
Query 7296 TACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATA 7348
|| |||| |||||| | || || || |||||||| | |||||||
Sbjct 618 CACTCCTTTTGATGATAATTCTAGTGATGAGGTTGATCCTTTTATAAACCATA 566
Score = 82.4 bits (90), Expect = 9e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 6820 ATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCT 6879
|||| ||||| |||||| ||||||||| ||||| |||| | ||| ||||||
Sbjct 1223 ATAGGTTTTAAATGATCATTATAAATATGTGCATCACCTAATTGAATAATTAATTCATAG 1164
Query 6880 GGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTA 6939
|||| ||| ||| | ||| | || || ||| || || ||||||| |||
Sbjct 1163 GGTTCTGTATTGGTGACTTTTGAAATCATATGAACTAGTAAGGCGTATGAAGCTATATTG 1104
Query 6940 AAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAA 6992
|| |||| |||||||| ||||||||||||| ||||||| | ||| |||||
Sbjct 1103 AAGGGTAGTCCTAATCCAATATCTGCTGATCGTTGATAAAGTATACATGATAA 1051
>seq8761
Length=3720
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387
|| ||| ||| | | |||||| | | ||||||||||| ||| ||||| ||||| |||
Sbjct 1831 GTAAAAGTTAGAATTAGATCTACAAGAATACCTGAAACAGGAGATAAATTTGCATCTAGA 1890
Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447
|| |||||||| ||| || || | ||| | |||||||||||||| |||||
Sbjct 1891 CATGGACAAAAAGGTACAGTAGGGATTTTATATAGACAAGAAGATATGCCATTTACATCT 1950
Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507
|| || || |||||| | |||||||| || |||||| | ||| || |||||| ||
Sbjct 1951 GAAGGAATTTGTCCGGATATCATTATTAATCCTCATGCTATCCCATCACGTATGACGATT 2010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595654320510000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |