Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq20492 141 1e-28 seq8761 95.1 1e-14 >seq20492 Length=5790 Score = 141 bits (156), Expect = 1e-28 Identities = 248/353 (70%), Gaps = 16/353 (5%) Strand=Plus/Minus Query 7004 TAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCC---TGATCTATATCAG 7060 || ||||||||||||| || | |||||| ||||| || ||| | | || ||||| Sbjct 910 TAACATAAAATTGACAAAACATATGACAAGGAGG---AAGTGCCATTTTAGATAAATCAG 854 Query 7061 ATGGATTCCAAGCAGTCATTAAAATACGTCTA---TCATTTGGATTTGTTTTTAATTTTG 7117 | |||||||||||| | |||||| |||| ||| ||||||| || |||||| Sbjct 853 AAGGATTCCAAGCACT---TAAAATGATTCTACGATCAATTGGATTAAATTG-AATTTTA 798 Query 7118 TTA-TA-ATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTAT 7175 | | || | | ||| ||||||||| ||||| | || | ||||| | | | || || | Sbjct 797 TGAATACACTCTTT-TAATTGATCAATACCTTTTCCATGATAATCATCTTTAAAAGTTTT 739 Query 7176 ATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTC 7235 ||| | || |||||||||||||||||||| |||||||| || |||| ||| |||||| Sbjct 738 ATATTCTGCACCAAAATGTCTCCATTGAAATCCATAAATCGGTCCTAGATCTCCTTCTGA 679 Query 7236 ACGATGATTAAATCCTAATCGATTTAAATTAGATTTTGATCCATAAGCATCCCAAATATG 7295 | | | ||||||| | ||||||| || || ||||||| ||| ||| |||| Sbjct 678 TCTTTCTGTTAATCCTATACTCTTTAAATAAGTTTGAGATCCATTTCCATTCCAGATATT 619 Query 7296 TACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATA 7348 || |||| |||||| | || || || |||||||| | ||||||| Sbjct 618 CACTCCTTTTGATGATAATTCTAGTGATGAGGTTGATCCTTTTATAAACCATA 566 Score = 82.4 bits (90), Expect = 9e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 6820 ATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCT 6879 |||| ||||| |||||| ||||||||| ||||| |||| | ||| |||||| Sbjct 1223 ATAGGTTTTAAATGATCATTATAAATATGTGCATCACCTAATTGAATAATTAATTCATAG 1164 Query 6880 GGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTA 6939 |||| ||| ||| | ||| | || || ||| || || ||||||| ||| Sbjct 1163 GGTTCTGTATTGGTGACTTTTGAAATCATATGAACTAGTAAGGCGTATGAAGCTATATTG 1104 Query 6940 AAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAA 6992 || |||| |||||||| ||||||||||||| ||||||| | ||| ||||| Sbjct 1103 AAGGGTAGTCCTAATCCAATATCTGCTGATCGTTGATAAAGTATACATGATAA 1051 >seq8761 Length=3720 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 || ||| ||| | | |||||| | | ||||||||||| ||| ||||| ||||| ||| Sbjct 1831 GTAAAAGTTAGAATTAGATCTACAAGAATACCTGAAACAGGAGATAAATTTGCATCTAGA 1890 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || |||||||| ||| || || | ||| | |||||||||||||| ||||| Sbjct 1891 CATGGACAAAAAGGTACAGTAGGGATTTTATATAGACAAGAAGATATGCCATTTACATCT 1950 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507 || || || |||||| | |||||||| || |||||| | ||| || |||||| || Sbjct 1951 GAAGGAATTTGTCCGGATATCATTATTAATCCTCATGCTATCCCATCACGTATGACGATT 2010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595654320510000