Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq18579 120 5e-23 seq18762 104 4e-18 seq6696 95.1 2e-15 seq7310 86.0 1e-12 >seq18579 Length=1438 Score = 120 bits (132), Expect = 5e-23 Identities = 118/150 (79%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 16440 GTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | | |||| ||||| ||||||||||| || ||||||||||| || || ||| Sbjct 849 GTCATCGTAAAA-TCTTGCGAGACAACATCCAAGGTATTACCAAGCCAGCCATTCGACGT 907 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || || || || ||||| ||||| ||| ||||||| | |||| ||||| | ||||| | Sbjct 908 CTTGCCCGACGAGGTGGTGTCAAACGTATCTCTGGTCTTATCTACGAAGAAACTCGTGGT 967 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 ||| | || |||||||| ||| ||||||| Sbjct 968 GTTCTTAAAATCTTCCTTGAGAACGTTATC 997 >seq18762 Length=7612 Score = 104 bits (114), Expect = 4e-18 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | ||| ||| || || ||||||||||| || || ||||| || |||||| | Sbjct 638 GTCATCGTAAGAT-TCTGCGTGACAACATCCAAGGTATTACAAAGCCTGCAATCCGTTGA 580 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 | || || | || || || |||||| |||||||| | | || ||||||| || | | Sbjct 579 TTAGCCCGAAGAGGAGGTGTGAAGCGTATCTCTGGACTCATTTACGAAGAGACACGAGGT 520 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 ||| | |||||||||||| ||| |||||| | ||| | || ||||||||| Sbjct 519 GTTCTTAAGATCTTCCTCGAGAACGTTATTCGAGATTCAGTCACATATACCGAG 466 >seq6696 Length=3175 Score = 95.1 bits (104), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||| |||||| || |||||||||||||||||||| || ||||| ||||| | || || Sbjct 1630 AGAT-TCTTCGTGACAACATCCAAGGAATCACCAAACCTGCTATACGTCGATTAGCACGA 1688 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 | || || |||||||| |||| || ||| | || ||||||| ||| | || |||||| Sbjct 1689 AGAGGAGGTGTCAAGCGAATCTCAGGCTTGATTTACGAAGAGACTCGAGGAGTCTTGAAG 1748 Query 16568 ATCTTCCTC 16576 | | |||| Sbjct 1749 GTATGCCTC 1757 >seq7310 Length=2335 Score = 86.0 bits (94), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| ||||| ||||||||||| |||||||| || || ||||| || | || || || | Sbjct 940 TCTTGCGAGACAACATCCAAGGTATCACCAAACCCGCAATCCGACGATTAGCCCGACGAG 881 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||||||| ||||||| | |||| ||||||| Sbjct 880 GTGGTGTCAAGCGTATCTCTGGTCTCATCTACGAAGAGA 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79048479377925