Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05-
22] 29,225 sequences; 62,222,430 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq18579 120 5e-23
seq18762 104 4e-18
seq6696 95.1 2e-15
seq7310 86.0 1e-12
>seq18579
Length=1438
Score = 120 bits (132), Expect = 5e-23
Identities = 118/150 (79%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 16440 GTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498
||||||| | | |||| ||||| ||||||||||| || ||||||||||| || || |||
Sbjct 849 GTCATCGTAAAA-TCTTGCGAGACAACATCCAAGGTATTACCAAGCCAGCCATTCGACGT 907
Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558
|| || || || ||||| ||||| ||| ||||||| | |||| ||||| | ||||| |
Sbjct 908 CTTGCCCGACGAGGTGGTGTCAAACGTATCTCTGGTCTTATCTACGAAGAAACTCGTGGT 967
Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATC 16588
||| | || |||||||| ||| |||||||
Sbjct 968 GTTCTTAAAATCTTCCTTGAGAACGTTATC 997
>seq18762
Length=7612
Score = 104 bits (114), Expect = 4e-18
Identities = 129/174 (74%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498
||||||| | ||| ||| || || ||||||||||| || || ||||| || |||||| |
Sbjct 638 GTCATCGTAAGAT-TCTGCGTGACAACATCCAAGGTATTACAAAGCCTGCAATCCGTTGA 580
Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558
| || || | || || || |||||| |||||||| | | || ||||||| || | |
Sbjct 579 TTAGCCCGAAGAGGAGGTGTGAAGCGTATCTCTGGACTCATTTACGAAGAGACACGAGGT 520
Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
||| | |||||||||||| ||| |||||| | ||| | || |||||||||
Sbjct 519 GTTCTTAAGATCTTCCTCGAGAACGTTATTCGAGATTCAGTCACATATACCGAG 466
>seq6696
Length=3175
Score = 95.1 bits (104), Expect = 2e-15
Identities = 99/129 (77%), Gaps = 1/129 (1%)
Strand=Plus/Plus
Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507
|||| |||||| || |||||||||||||||||||| || ||||| ||||| | || ||
Sbjct 1630 AGAT-TCTTCGTGACAACATCCAAGGAATCACCAAACCTGCTATACGTCGATTAGCACGA 1688
Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567
| || || |||||||| |||| || ||| | || ||||||| ||| | || ||||||
Sbjct 1689 AGAGGAGGTGTCAAGCGAATCTCAGGCTTGATTTACGAAGAGACTCGAGGAGTCTTGAAG 1748
Query 16568 ATCTTCCTC 16576
| | ||||
Sbjct 1749 GTATGCCTC 1757
>seq7310
Length=2335
Score = 86.0 bits (94), Expect = 1e-12
Identities = 79/99 (80%), Gaps = 1/99 (1%)
Strand=Plus/Minus
Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511
|||| ||||| ||||||||||| |||||||| || || ||||| || | || || || |
Sbjct 940 TCTTGCGAGACAACATCCAAGGTATCACCAAACCCGCAATCCGACGATTAGCCCGACGAG 881
Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| ||||||||| ||||||| | |||| |||||||
Sbjct 880 GTGGTGTCAAGCGTATCTCTGGTCTCATCTACGAAGAGA 842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79048479377925
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |