Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq18369 91.5 3e-13 >seq18369 Length=7048 Score = 91.5 bits (100), Expect = 3e-13 Identities = 156/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 ||||| | || || || || ||||||||||||||||| || || || | || || |||| Sbjct 1458 TGCCATT-GGATCACTCTCTGGTGGTTGGAAGATGAAACTTGCTCTTGCCCGAGCAATTC 1516 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | | |||||| || | |||||||||||||| |||||||| |||| ||||| Sbjct 1517 TTTTCAAGGCCGATATCTTGCTGCTTGATGAGCCTACCAACCATTTGGATGTGCTCAACG 1576 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | ||||| || |||| | | ||| ||| | | | || |||| ||||||| Sbjct 1577 TTCAATGGCTGATGGACTACTTGAAATCTCTTGAGACTTGTACCTCGATCATCGTCTCTC 1636 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACT 279915 ||||||| || ||| | || || || | | ||||||||||| Sbjct 1637 ACGACTCAGGATTCTTGGACAATGTTTGTACCGACATCATTCACT 1681 Score = 91.5 bits (100), Expect = 3e-13 Identities = 156/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 ||||| | || || || || ||||||||||||||||| || || || | || || |||| Sbjct 4686 TGCCATT-GGATCACTCTCTGGTGGTTGGAAGATGAAACTTGCTCTTGCCCGAGCAATTC 4744 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | | |||||| || | |||||||||||||| |||||||| |||| ||||| Sbjct 4745 TTTTCAAGGCCGATATCTTGCTGCTTGATGAGCCTACCAACCATTTGGATGTGCTCAACG 4804 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | ||||| || |||| | | ||| ||| | | | || |||| ||||||| Sbjct 4805 TTCAATGGCTGATGGACTACTTGAAATCTCTTGAGACTTGTACCTCGATCATCGTCTCTC 4864 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACT 279915 ||||||| || ||| | || || || | | ||||||||||| Sbjct 4865 ACGACTCAGGATTCTTGGACAATGTTTGTACCGACATCATTCACT 4909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027451931328225