Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq24802 104 3e-17 >seq24802 Length=2283 Score = 104 bits (114), Expect = 3e-17 Identities = 317/482 (66%), Gaps = 16/482 (3%) Strand=Plus/Plus Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 |||||||||| | ||||| ||| || ||||| || ||| || ||||||| Sbjct 1705 CCACATATCATATTGGAGTTCTCCTAAACTAGCGGGCGAACCGGGAAACGTTTCGTATGC 1764 Query 114163 GCCCTCAACCTCCGCCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTC 114219 ||| || | | || | ||| ||| || || |||||||||||||| | ||||| Sbjct 1765 GCCTTCCGACACGGCAAGCTCGTTTGAG---GCTTCAAGGGCTGCGTGATAGAGCGTCTC 1821 Query 114220 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAAT 114279 || || ||||||||| | ||||| || ||||| || | || | || | | Sbjct 1822 GAAGATCTGAGCATTCAATTTTTTGGCTTCCGGTGAATCGAATGGAAG-CTTCAAGATTT 1880 Query 114280 -AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 114338 ||| |||| || | || | || |||| || || || ||||||||||| || |||| Sbjct 1881 GAAAGGCATCTGCTAATCCGTTTACTCCGATTCCGATGGGACGATGTCTCATGTTGGACT 1940 Query 114339 TTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 114397 || ||| ||| ||||| || ||||| ||| || | | ||| | || ||| Sbjct 1941 TTTTAGCT-TCTGGGACGGGGTAGTAATTCACATCTATTATACGATTCAAGTTCCACGTG 1999 Query 114398 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 114457 || |||| || | || || ||||||| | ||||| | || || | || ||| | Sbjct 2000 ACTTCCTTCGTCACCTCGTGTAGCTTTTGGAAATCATA-----GACTC-CGTCGGTGATA 2053 Query 114458 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 114517 ||| | || || ||||| || ||||| ||||| || | |||||| | | ||| Sbjct 2054 TACGTCGGCAGCGCGATCGAGGCCAGGTTACAAACCGCCACCTCATCTGGGGCTGAATAC 2113 Query 114518 TCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 114577 || || || || ||||| | || || ||| |||||||| | |||||||||||| || Sbjct 2114 TCGATGATCTCAGTACAAAGGTTCGATGACTTGATGGTGCCAAGGTTCTTTTGATTCGAT 2173 Query 114578 TT 114579 || Sbjct 2174 TT 2175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597135379263000