Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq24802 104 3e-17 seq25269 86.0 8e-12 >seq24802 Length=2283 Score = 104 bits (114), Expect = 3e-17 Identities = 262/393 (67%), Gaps = 14/393 (4%) Strand=Plus/Plus Query 116152 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG 116211 || || |||||||||||||| | ||||| || || ||||||||| | ||||| || Sbjct 1793 GCTTCAAGGGCTGCGTGATAGAGCGTCTCGAAGATCTGAGCATTCAATTTTTTGGCTTCC 1852 Query 116212 TCGGAATCAAACGCGAGACGGCACAAAAT---AAATACATCCGCGAGACCTTGGACACCG 116268 ||||| || | || | ||| || ||| |||| || | || | || ||| Sbjct 1853 GGTGAATCGAATG---GAAGCTTCAAGATTTGAAAGGCATCTGCTAATCCGTTTACTCCG 1909 Query 116269 AGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATAAAAATT 116327 | || || || ||||||||||| || |||||| ||| ||| ||||| || |||| Sbjct 1910 ATTCCGATGGGACGATGTCTCATGTTGGACTTTTTAGCT-TCTGGGACGGGGTAGTAATT 1968 Query 116328 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 116387 | ||| || | | ||| | || ||||| |||| || | || || ||||||| Sbjct 1969 CACATCTATTATACGATTCAAGTTCCACGTGACTTCCTTCGTCACCTCGTGTAGCTTTTG 2028 Query 116388 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 116447 | ||||| | || || | || ||| |||| | || || ||||| || ||||| || Sbjct 2029 GAAATCATA-----GACTC-CGTCGGTGATATACGTCGGCAGCGCGATCGAGGCCAGGTT 2082 Query 116448 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACT 116507 ||| || | |||||| | | ||||| || || || ||||| | || || Sbjct 2083 ACAAACCGCCACCTCATCTGGGGCTGAATACTCGATGATCTCAGTACAAAGGTTCGATGA 2142 Query 116508 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 116540 ||| |||||||| | |||||||||||| || || Sbjct 2143 CTTGATGGTGCCAAGGTTCTTTTGATTCGATTT 2175 >seq25269 Length=7113 Score = 86.0 bits (94), Expect = 8e-12 Identities = 182/267 (68%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 176719 ATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAA-CTCTTGGTTTG 176777 ||| | ||| ||||||||||| |||| |||||| |||| || ||||| ||| ||| | Sbjct 1829 ATATTTCTTGCCTTGTTGAAGTCCCATAATCTTTTTGATAT-GTTGAATCTCAGCGTTCG 1887 Query 176778 ATGTGAGTTGCG--CCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAA 176835 | ||| | |||||| || || || || ||| | || || || || ||||| Sbjct 1888 CCAACAATTGAGTCCCACTG--GCTTCTCGAACGTTTAATAATTTTCCACGAAGTGGGAA 1945 Query 176836 CACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGA 176895 ||||| || | |||||| |||| || | | |||||||| || | | || || || Sbjct 1946 AACACCATAATTATCACGCCCAATGACTGTTAACCCAGCAACAGCCAATGATTTGGCTGA 2005 Query 176896 ATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGC 176955 ||| || ||||| | || | ||||||| | | | || ||||||||| || || || Sbjct 2006 ATCTCCTTCCGTTAAAATCAAAGTACACTCTGCCGCTTTCTTCGTCCCCGCGTTATTGGC 2065 Query 176956 ATCGTCCAACTTGGGAATACCAGTAAT 176982 ||| || | ||| ||| ||||| || Sbjct 2066 ATCCTCTAGTTTGACAATTCCAGTGAT 2092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613283078151000