Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05-
22] 29,225 sequences; 62,222,430 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq24802 104 3e-17
seq25269 86.0 8e-12
>seq24802
Length=2283
Score = 104 bits (114), Expect = 3e-17
Identities = 262/393 (67%), Gaps = 14/393 (4%)
Strand=Plus/Plus
Query 116152 GCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG 116211
|| || |||||||||||||| | ||||| || || ||||||||| | ||||| ||
Sbjct 1793 GCTTCAAGGGCTGCGTGATAGAGCGTCTCGAAGATCTGAGCATTCAATTTTTTGGCTTCC 1852
Query 116212 TCGGAATCAAACGCGAGACGGCACAAAAT---AAATACATCCGCGAGACCTTGGACACCG 116268
||||| || | || | ||| || ||| |||| || | || | || |||
Sbjct 1853 GGTGAATCGAATG---GAAGCTTCAAGATTTGAAAGGCATCTGCTAATCCGTTTACTCCG 1909
Query 116269 AGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC-ACGGGATAAAAATT 116327
| || || || ||||||||||| || |||||| ||| ||| ||||| || ||||
Sbjct 1910 ATTCCGATGGGACGATGTCTCATGTTGGACTTTTTAGCT-TCTGGGACGGGGTAGTAATT 1968
Query 116328 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 116387
| ||| || | | ||| | || ||||| |||| || | || || |||||||
Sbjct 1969 CACATCTATTATACGATTCAAGTTCCACGTGACTTCCTTCGTCACCTCGTGTAGCTTTTG 2028
Query 116388 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 116447
| ||||| | || || | || ||| |||| | || || ||||| || ||||| ||
Sbjct 2029 GAAATCATA-----GACTC-CGTCGGTGATATACGTCGGCAGCGCGATCGAGGCCAGGTT 2082
Query 116448 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACT 116507
||| || | |||||| | | ||||| || || || ||||| | || ||
Sbjct 2083 ACAAACCGCCACCTCATCTGGGGCTGAATACTCGATGATCTCAGTACAAAGGTTCGATGA 2142
Query 116508 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTT 116540
||| |||||||| | |||||||||||| || ||
Sbjct 2143 CTTGATGGTGCCAAGGTTCTTTTGATTCGATTT 2175
>seq25269
Length=7113
Score = 86.0 bits (94), Expect = 8e-12
Identities = 182/267 (68%), Gaps = 6/267 (2%)
Strand=Plus/Plus
Query 176719 ATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAA-CTCTTGGTTTG 176777
||| | ||| ||||||||||| |||| |||||| |||| || ||||| ||| ||| |
Sbjct 1829 ATATTTCTTGCCTTGTTGAAGTCCCATAATCTTTTTGATAT-GTTGAATCTCAGCGTTCG 1887
Query 176778 ATGTGAGTTGCG--CCACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAA 176835
| ||| | |||||| || || || || ||| | || || || || |||||
Sbjct 1888 CCAACAATTGAGTCCCACTG--GCTTCTCGAACGTTTAATAATTTTCCACGAAGTGGGAA 1945
Query 176836 CACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGA 176895
||||| || | |||||| |||| || | | |||||||| || | | || || ||
Sbjct 1946 AACACCATAATTATCACGCCCAATGACTGTTAACCCAGCAACAGCCAATGATTTGGCTGA 2005
Query 176896 ATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGC 176955
||| || ||||| | || | ||||||| | | | || ||||||||| || || ||
Sbjct 2006 ATCTCCTTCCGTTAAAATCAAAGTACACTCTGCCGCTTTCTTCGTCCCCGCGTTATTGGC 2065
Query 176956 ATCGTCCAACTTGGGAATACCAGTAAT 176982
||| || | ||| ||| ||||| ||
Sbjct 2066 ATCCTCTAGTTTGACAATTCCAGTGAT 2092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613283078151000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |