Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq16220 100 1e-15 seq8761 96.9 1e-14 >seq16220 Length=1922 Score = 100 bits (110), Expect = 1e-15 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || || || ||||| || || || || ||||| || |||| |||||| | || Sbjct 160 CTAACCGGGAAGACTATCACCCTCGAGGTCGAATCTTCCGATACCATTGACAACGTCAAG 101 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || || |||||||| ||||| ||||| || |||||||||||||| || ||| | || Sbjct 100 GCCAAGATCCAAGATAAAGAAGGTATTCCACCGGATCAACAACGTTTGATCTTCGCCGGA 41 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||||||||||||| ||| | || | || ||||| || Sbjct 40 AAACAACTTGAAGACGGACGTACCCTTGCTGATTACAA 3 >seq8761 Length=3720 Score = 96.9 bits (106), Expect = 1e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 248475 AAATT--CAACTAAACATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGAT 248532 ||||| || ||| ||||||||||||||| ||||| || ||| | |||| |||| Sbjct 1876 AAATTTGCATCTAGACATGGACAAAAAGGTACAGTAGGGATTTTATATAGACAAGAAGAT 1935 Query 248533 ATGCCTTTCACATCAGAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCT 248592 ||||| || ||||| ||||| || ||| ||| | ||| | ||||| |||| ||| || Sbjct 1936 ATGCCATTTACATCTGAAGGAATTTGTCCGGATATCATTATTAATCCTCATGCTATCCCA 1995 Query 248593 ACACGTATGACTATGGGACAATTAG 248617 |||||||||| || ||||| |||| Sbjct 1996 TCACGTATGACGATTGGACATTTAG 2020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974978601506300