Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05-
22] 29,225 sequences; 62,222,430 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq20492 105 5e-17
seq964 96.9 3e-14
seq25269 93.3 3e-13
>seq20492
Length=5790
Score = 105 bits (116), Expect = 5e-17
Identities = 148/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 663205 AGAAGGAGATATTGGTCCAGGATACGGTTTTCAAATGAGATATTGGGGAGCTGAGTACAC 663264
|||||||||| | || || || || |||||| |||| ||| || || || || |
Sbjct 681 AGAAGGAGATCTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATAA 740
Query 663265 TGATTGTAAAACATCTTACCAAGGACAAGGTATTGATCAATTAAACAAATGTATTGAATC 663324
|| |||| ||| || ||| ||||||||||||||||||| | |||||| |
Sbjct 741 AACTTTTAAAGATGATTATCATGGAAAAGGTATTGATCAATTAAAAGAGTGTATTCATAA 800
Query 663325 TATTCAAAATAATCCTCACGACAGAAGAATCATGATAAATCTTTGGAATTGTTCTGATTT 663384
|||||| |||||| || | |||||||| ||| | ||||||| |||||||||
Sbjct 801 AATTCAATTTAATCCAATTGATCGTAGAATCATTTTAAGTGCTTGGAATCCTTCTGATTT 860
Query 663385 AGATAAAATGGCACTTGCACCATGTCAT 663412
| ||||||||||||| | || ||||||
Sbjct 861 ATCTAAAATGGCACTTCCTCCTTGTCAT 888
>seq964
Length=784
Score = 96.9 bits (106), Expect = 3e-14
Identities = 172/251 (69%), Gaps = 0/251 (0%)
Strand=Plus/Minus
Query 517388 CGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT 517447
|||||||||||||||| ||| || | || ||| ||| || || | ||||||| |||
Sbjct 725 CGTTCACCCTCGAAAACTTGAATGTTGACACCAGCTTGGTTGTCGGCGTAAGTTGAGAAT 666
Query 517448 ACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 517507
||| | ||| |||||| |||||||||| |||| | || | | ||||
Sbjct 665 ACTTCACACTTTCGGTTAGGAATGGTTGTGTTTCGGGGGATAAGAGCAGTGAAGACACCA 606
Query 517508 CCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 517567
|| ||||| || | ||| || || ||||| | ||||| | || | || | ||||
Sbjct 605 CCGGCTGTCTCGATACCCAGCGAGAGAGGTGCAACATCCAAGAGAAGAAGGTCTTGAGTC 546
Query 517568 TTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCT 517627
|| || ||| | |||| ||| ||||| || || | ||| ||||| || ||||||||
Sbjct 545 TTCTCGGAAGTATCACCAGAAAGGATAGCAGCCTGGACAGCGGCACCGTAGGCAACAGCC 486
Query 517628 TCATCAGGATT 517638
||||| || ||
Sbjct 485 TCATCTGGGTT 475
>seq25269
Length=7113
Score = 93.3 bits (102), Expect = 3e-13
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 635441 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTAAT 635500
||||| | ||||| || || ||||||||||| ||| |||| ||| | |||| | |
Sbjct 2032 TGTACTTTGATTTTAACGGAAGGAGATTCAGCCAAATCATTGGCTGTTGCTGGGTTAACA 1973
Query 635501 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 635560
|| ||||| | ||| ||||||| |||||||||||| | |||||| | || || ||| |
Sbjct 1972 GTCATTGGGCGTGATAATTATGGTGTTTTCCCACTTCGTGGAAAATTATTAAACGTTCGA 1913
Query 635561 GATGCTAGTCCTaaaaaaaTTGCT-GATAATGAGGAAATTACAGCA-ATCaaaaaaaTTG 635618
|| || ||| | ||||| | | || | || ||| || || |||||||| |||
Sbjct 1912 GAAGCCAGT-GGGACTCAATTGTTGGCGAACGCTGAGATT-CAACATATCAAAAAGATTA 1855
Query 635619 TTGGACTTGAACAAGGAAA 635637
| |||||| ||||||| ||
Sbjct 1854 TGGGACTTCAACAAGGCAA 1836
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3779372159232850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |