Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq10901 140 4e-28 seq964 125 9e-24 seq23082 111 2e-19 seq25269 98.7 1e-15 >seq10901 Length=2100 Score = 140 bits (154), Expect = 4e-28 Identities = 296/438 (68%), Gaps = 9/438 (2%) Strand=Plus/Minus Query 11250 AACATCAGGTAAAGAAACTTGTATTTTACGATCAAATCTACCGGGGCGTAATAACGCATC 11309 |||||||||| | |||| || | ||||||||||| ||| || | | ||| || | Sbjct 720 AACATCAGGTCTATCAACTGAAATATGACGATCAAATCGACCAGGTCTAAGTAATGCTTT 661 Query 11310 GTCGAGTATATCGATACGGTTTGTTGCACCTATAACAACAATTTCAGTTTCATTCTCGAA 11369 || | || ||| || ||||| || ||| ||||| | | || | | | || || Sbjct 660 ATCTAATACATCAGCTCGATTTGTACCAGCTAAGACAACTACATGAGCTGAAGTATCAAA 601 Query 11370 ACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCACGCTCATCGTTTGCCGCAAA 11429 |||||||||||| ||||||||| |||| || ||| | ||||| ||| | |||| Sbjct 600 TCCATCCATTTCTACTAATAATTGATTAAGCGTAGATTCTCTTTCATCATTTCCTCCAAA 541 Query 11430 CCC-----ATTCATACTTCTTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATA 11484 || ||| ||| |||| |||||||||||||| || ||||||| ||| | |||| Sbjct 540 TCCTCCTGATT--TACCTCTTGCTTTACCAATCGCATCTATCTCATCTACAAATACAATA 483 Query 11485 CACGGTTGATTTTCACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCTACGCCT 11544 || ||| ||| | || | |||| | ||| || |||||| | ||||| ||| Sbjct 482 CAAGGTGCATTCTTTTTGGCTGTTGCAAACAAATCTCGTACTCTTGAAGGTCCTACTCCT 423 Query 11545 ACAAACATTTCAACGAACGATGACCCCGAACACTGA-ATAAAAGGAACGGAAGATTCACC 11603 ||||||||||| || || || || ||| ||||| | || || || | ||| || Sbjct 422 ACAAACATTTCTACAAATTCAGATCCTGAA-ACTGATAAGAATGGCACTCCTGCTTCTCC 364 Query 11604 CGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCTGTTAATAATGCACC 11663 ||| | || ||||| | |||||||||||||||||| ||||| | | ||||| Sbjct 363 TGCTGTTGCTTTGGCTAATAAGGTTTTACCTGTACCTGGTGGACCTGAAAGGATGGCACC 304 Query 11664 CCTTGGTATTTTAGCACC 11681 |||| || || || || Sbjct 303 TTTTGGAATCTTGGCTCC 286 >seq964 Length=784 Score = 125 bits (138), Expect = 9e-24 Identities = 195/279 (70%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTT 7186 ||||| || || || ||||| || || ||||| |||| ||| || | || || ||||| Sbjct 350 GGGATACGGGTGGAACCACCAACTAATACGATCTCATGCACGTTGGCCTTGTCAATCTTG 291 Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246 ||||||| | ||| || ||||| ||||| || | ||||||||| || ||| Sbjct 290 GAGTCTCTCAACACTTTCTCAACAGGCTCCATGGTCTTCCTGAACAAGTCTTGGCAGAGT 231 Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| || || |||||||||| ||||||||||| ||||| || || | | || || Sbjct 230 TCCTCGAATCGAGCACGGGTAAGAGATGTATAGAAGTCAACACCCTCAAAAAGAGAGTCG 171 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 || || || | || || || | || || | |||||||| || || || || || ||| Sbjct 170 ATCTCGATAGAGGTCTGGGCAGCGGAGGAGAGGGTTCGCTTGGCACGTTCGCAAGCAGTT 111 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || | || || | |||||| | || | ||| | |||| Sbjct 110 CGGAGTCGTCGTACGGCACGGGCATTGCTGGAGAGATCT 72 >seq23082 Length=2745 Score = 111 bits (122), Expect = 2e-19 Identities = 181/259 (70%), Gaps = 9/259 (3%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||||||||||||||| ||||| || || || || || ||||||| ||| Sbjct 1100 ATCGAAATCTTCACCACCCAAGTGGGTATCACCAGCTGTAGCCAACACCTCAAAGACACC 1159 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572 | || ||| | | || ||||| || |||||||| || || || | ||||| Sbjct 1160 CTCATCGATGGAAAGGAGAGAGACATCGAAGGTACCACCTCCAAGATCGTACACAATGAT 1219 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 | |||| || | ||| |||| || ||||| || || ||||| || || ||||| Sbjct 1220 T--TGTCGT----TCACCCTTGGTCTTGTCAAGACCATAGGCAATAGCGGCGGCGGTTGG 1273 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || | |||||||||| ||||| ||||| || | | ||||| || || || || Sbjct 1274 CTCGTTGACAATACGAAGAACGTTCAAACCAGCGATCATACCGGCATCCTTGGTTGCCTG 1333 Query 7693 TCGTTGCGAATCGTTAAAG 7711 || || | ||||| ||| Sbjct 1334 ACGCTGAGCGTCGTTGAAG 1352 >seq25269 Length=7113 Score = 98.7 bits (108), Expect = 1e-15 Identities = 167/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 184139 TTCCCTTGCTGAAGCCCCAAAATCTTTTTAAGATCATTAAACTCCTTGTTTTCGGTAAGT 184198 || ||||| ||||| |||| ||||||||| | || | || ||| ||| | | | Sbjct 1836 TTGCCTTGTTGAAGTCCCATAATCTTTTTGATATGTTGAATCTCAGCGTTCGCCAACAAT 1895 Query 184199 TGTTTTACACTCGCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAA 184258 || | |||| || || || ||||| |||| || | ||| || |||||||| ||| Sbjct 1896 TGAGTCCCACTGGCTTCTCGAACGTTTAATAATTTTCCACGAAGTGGGAAAACACCATAA 1955 Query 184259 TGATCACGACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCG 184318 | |||||| |||| |||| | ||||||| || | || ||| || ||||| ||||| Sbjct 1956 TTATCACGCCCAATGACTGTTAACCCAGCAACAGCCAATGATTTGGCTGAATCTCCTTCC 2015 Query 184319 GTAATAATAAGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGT 184378 || | ||| | |||||||| | | | | || || || ||||||||||| || ||| Sbjct 2016 GTTAAAATCAAAGTACACTCTGCCGCTTTCTTCGTCCCCGCGTTATTGGCATCCTCTAGT 2075 Query 184379 TT 184380 || Sbjct 2076 TT 2077 Score = 82.4 bits (90), Expect = 1e-10 Identities = 298/461 (65%), Gaps = 4/461 (1%) Strand=Plus/Plus Query 183121 AATATCTAACGGATTAAACGGTGGTATATATGAACTAAATCCGGTACCAATACCTTCAGT 183180 |||||| | ||||||| | ||||||| |||||| |||| || ||||| || | Sbjct 605 AATATCCATCGGATTATAATTCGGTATATCTGAACTCCATCCTGTCCCAATTCCACTTGA 664 Query 183181 TCCATTTACCAAAACGGTCGGTAATATAGGAACATAATAGTCAGGTTCGATTTGTTTACC 183240 ||||||||| || || ||||||| | ||| ||||| | |||||||||||||| || Sbjct 665 TCCATTTACTAAGACCATCGGTAAGACAGGTACATACCATTCAGGTTCGATTTGAGCTCC 724 Query 183241 GTCGTCGTCGAGATAGTTTAATACTGGATCATCTTTGGGATCAAAAAGTATTCTCGCGTT 183300 ||| || | ||| || || || | ||||||| || || | || | | Sbjct 725 GTCATCAGTTAAATAATTCAAAACGTGGTCATCTTGAGGCGGGAAGATCGCCCTAGTAAT 784 Query 183301 TTTAGTCAAT-TTTGTAAATATATACC-TGGTTTGACTCGCGTCTTTACCACCCATGAGA 183358 || ||||| || ||||| ||||||| || | || || |||||||| || | Sbjct 785 CTT-TTCAATATTGGTAAAGATATACCTTGCAGAGGCT-GCATCTTTACCGCCATTTGCT 842 Query 183359 CGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTAAAATTA 183418 | |||||||||||| ||| ||| || | ||||| ||||| || ||| || Sbjct 843 CTTGTACCAAATTGTCCATTGGGTGAAAGAACGTTAATGTTATTGCTTCCGACAAAGTTT 902 Query 183419 TGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCACCGTGGTGATACGATGTTTTT 183478 ||||| | | ||||| || | || | | ||| ||||| ||||| | || | | Sbjct 903 TGTGCGAGTGCGACAATCGTTTGTGTAAGACTTTGTTCTCCGTGATGATAGGCTGAATGT 962 Query 183479 TCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTCAGATGTAAGATTCTTTGTGAAA 183538 || | | ||| | | | ||| || || || || || | | | | ||| || |||| Sbjct 963 TCGGCACAGTAACCTCCCAGTTGAGCTACTTTGATCTCCGCTTTCAATTTCCTTTTGAAG 1022 Query 183539 CACGCGTATAACACTTTTCGTTGGGATGGTTTTAAACCATC 183579 || || | | ||||||| ||| ||||| || || || Sbjct 1023 CAAGCAAACAGGACTTTTCTTTGACCAGGTTTAAAGCCGTC 1063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634900778049000