Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05-
22] 29,225 sequences; 62,222,430 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq10901 140 4e-28
seq964 125 9e-24
seq23082 111 2e-19
seq25269 98.7 1e-15
>seq10901
Length=2100
Score = 140 bits (154), Expect = 4e-28
Identities = 296/438 (68%), Gaps = 9/438 (2%)
Strand=Plus/Minus
Query 11250 AACATCAGGTAAAGAAACTTGTATTTTACGATCAAATCTACCGGGGCGTAATAACGCATC 11309
|||||||||| | |||| || | ||||||||||| ||| || | | ||| || |
Sbjct 720 AACATCAGGTCTATCAACTGAAATATGACGATCAAATCGACCAGGTCTAAGTAATGCTTT 661
Query 11310 GTCGAGTATATCGATACGGTTTGTTGCACCTATAACAACAATTTCAGTTTCATTCTCGAA 11369
|| | || ||| || ||||| || ||| ||||| | | || | | | || ||
Sbjct 660 ATCTAATACATCAGCTCGATTTGTACCAGCTAAGACAACTACATGAGCTGAAGTATCAAA 601
Query 11370 ACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCACGCTCATCGTTTGCCGCAAA 11429
|||||||||||| ||||||||| |||| || ||| | ||||| ||| | ||||
Sbjct 600 TCCATCCATTTCTACTAATAATTGATTAAGCGTAGATTCTCTTTCATCATTTCCTCCAAA 541
Query 11430 CCC-----ATTCATACTTCTTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATA 11484
|| ||| ||| |||| |||||||||||||| || ||||||| ||| | ||||
Sbjct 540 TCCTCCTGATT--TACCTCTTGCTTTACCAATCGCATCTATCTCATCTACAAATACAATA 483
Query 11485 CACGGTTGATTTTCACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCTACGCCT 11544
|| ||| ||| | || | |||| | ||| || |||||| | ||||| |||
Sbjct 482 CAAGGTGCATTCTTTTTGGCTGTTGCAAACAAATCTCGTACTCTTGAAGGTCCTACTCCT 423
Query 11545 ACAAACATTTCAACGAACGATGACCCCGAACACTGA-ATAAAAGGAACGGAAGATTCACC 11603
||||||||||| || || || || ||| ||||| | || || || | ||| ||
Sbjct 422 ACAAACATTTCTACAAATTCAGATCCTGAA-ACTGATAAGAATGGCACTCCTGCTTCTCC 364
Query 11604 CGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCTGTTAATAATGCACC 11663
||| | || ||||| | |||||||||||||||||| ||||| | | |||||
Sbjct 363 TGCTGTTGCTTTGGCTAATAAGGTTTTACCTGTACCTGGTGGACCTGAAAGGATGGCACC 304
Query 11664 CCTTGGTATTTTAGCACC 11681
|||| || || || ||
Sbjct 303 TTTTGGAATCTTGGCTCC 286
>seq964
Length=784
Score = 125 bits (138), Expect = 9e-24
Identities = 195/279 (70%), Gaps = 0/279 (0%)
Strand=Plus/Minus
Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTT 7186
||||| || || || ||||| || || ||||| |||| ||| || | || || |||||
Sbjct 350 GGGATACGGGTGGAACCACCAACTAATACGATCTCATGCACGTTGGCCTTGTCAATCTTG 291
Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246
||||||| | ||| || ||||| ||||| || | ||||||||| || |||
Sbjct 290 GAGTCTCTCAACACTTTCTCAACAGGCTCCATGGTCTTCCTGAACAAGTCTTGGCAGAGT 231
Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306
||||| || || |||||||||| ||||||||||| ||||| || || | | || ||
Sbjct 230 TCCTCGAATCGAGCACGGGTAAGAGATGTATAGAAGTCAACACCCTCAAAAAGAGAGTCG 171
Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366
|| || || | || || || | || || | |||||||| || || || || || |||
Sbjct 170 ATCTCGATAGAGGTCTGGGCAGCGGAGGAGAGGGTTCGCTTGGCACGTTCGCAAGCAGTT 111
Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405
|| | || || | |||||| | || | ||| | ||||
Sbjct 110 CGGAGTCGTCGTACGGCACGGGCATTGCTGGAGAGATCT 72
>seq23082
Length=2745
Score = 111 bits (122), Expect = 2e-19
Identities = 181/259 (70%), Gaps = 9/259 (3%)
Strand=Plus/Plus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
|||||||||||||||||||||||| ||||| || || || || || ||||||| |||
Sbjct 1100 ATCGAAATCTTCACCACCCAAGTGGGTATCACCAGCTGTAGCCAACACCTCAAAGACACC 1159
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572
| || ||| | | || ||||| || |||||||| || || || | |||||
Sbjct 1160 CTCATCGATGGAAAGGAGAGAGACATCGAAGGTACCACCTCCAAGATCGTACACAATGAT 1219
Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632
| |||| || | ||| |||| || ||||| || || ||||| || || |||||
Sbjct 1220 T--TGTCGT----TCACCCTTGGTCTTGTCAAGACCATAGGCAATAGCGGCGGCGGTTGG 1273
Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692
|| || | |||||||||| ||||| ||||| || | | ||||| || || || ||
Sbjct 1274 CTCGTTGACAATACGAAGAACGTTCAAACCAGCGATCATACCGGCATCCTTGGTTGCCTG 1333
Query 7693 TCGTTGCGAATCGTTAAAG 7711
|| || | ||||| |||
Sbjct 1334 ACGCTGAGCGTCGTTGAAG 1352
>seq25269
Length=7113
Score = 98.7 bits (108), Expect = 1e-15
Identities = 167/242 (69%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 184139 TTCCCTTGCTGAAGCCCCAAAATCTTTTTAAGATCATTAAACTCCTTGTTTTCGGTAAGT 184198
|| ||||| ||||| |||| ||||||||| | || | || ||| ||| | | |
Sbjct 1836 TTGCCTTGTTGAAGTCCCATAATCTTTTTGATATGTTGAATCTCAGCGTTCGCCAACAAT 1895
Query 184199 TGTTTTACACTCGCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAA 184258
|| | |||| || || || ||||| |||| || | ||| || |||||||| |||
Sbjct 1896 TGAGTCCCACTGGCTTCTCGAACGTTTAATAATTTTCCACGAAGTGGGAAAACACCATAA 1955
Query 184259 TGATCACGACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCG 184318
| |||||| |||| |||| | ||||||| || | || ||| || ||||| |||||
Sbjct 1956 TTATCACGCCCAATGACTGTTAACCCAGCAACAGCCAATGATTTGGCTGAATCTCCTTCC 2015
Query 184319 GTAATAATAAGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGT 184378
|| | ||| | |||||||| | | | | || || || ||||||||||| || |||
Sbjct 2016 GTTAAAATCAAAGTACACTCTGCCGCTTTCTTCGTCCCCGCGTTATTGGCATCCTCTAGT 2075
Query 184379 TT 184380
||
Sbjct 2076 TT 2077
Score = 82.4 bits (90), Expect = 1e-10
Identities = 298/461 (65%), Gaps = 4/461 (1%)
Strand=Plus/Plus
Query 183121 AATATCTAACGGATTAAACGGTGGTATATATGAACTAAATCCGGTACCAATACCTTCAGT 183180
|||||| | ||||||| | ||||||| |||||| |||| || ||||| || |
Sbjct 605 AATATCCATCGGATTATAATTCGGTATATCTGAACTCCATCCTGTCCCAATTCCACTTGA 664
Query 183181 TCCATTTACCAAAACGGTCGGTAATATAGGAACATAATAGTCAGGTTCGATTTGTTTACC 183240
||||||||| || || ||||||| | ||| ||||| | |||||||||||||| ||
Sbjct 665 TCCATTTACTAAGACCATCGGTAAGACAGGTACATACCATTCAGGTTCGATTTGAGCTCC 724
Query 183241 GTCGTCGTCGAGATAGTTTAATACTGGATCATCTTTGGGATCAAAAAGTATTCTCGCGTT 183300
||| || | ||| || || || | ||||||| || || | || | |
Sbjct 725 GTCATCAGTTAAATAATTCAAAACGTGGTCATCTTGAGGCGGGAAGATCGCCCTAGTAAT 784
Query 183301 TTTAGTCAAT-TTTGTAAATATATACC-TGGTTTGACTCGCGTCTTTACCACCCATGAGA 183358
|| ||||| || ||||| ||||||| || | || || |||||||| || |
Sbjct 785 CTT-TTCAATATTGGTAAAGATATACCTTGCAGAGGCT-GCATCTTTACCGCCATTTGCT 842
Query 183359 CGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTAAAATTA 183418
| |||||||||||| ||| ||| || | ||||| ||||| || ||| ||
Sbjct 843 CTTGTACCAAATTGTCCATTGGGTGAAAGAACGTTAATGTTATTGCTTCCGACAAAGTTT 902
Query 183419 TGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCACCGTGGTGATACGATGTTTTT 183478
||||| | | ||||| || | || | | ||| ||||| ||||| | || | |
Sbjct 903 TGTGCGAGTGCGACAATCGTTTGTGTAAGACTTTGTTCTCCGTGATGATAGGCTGAATGT 962
Query 183479 TCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTCAGATGTAAGATTCTTTGTGAAA 183538
|| | | ||| | | | ||| || || || || || | | | | ||| || ||||
Sbjct 963 TCGGCACAGTAACCTCCCAGTTGAGCTACTTTGATCTCCGCTTTCAATTTCCTTTTGAAG 1022
Query 183539 CACGCGTATAACACTTTTCGTTGGGATGGTTTTAAACCATC 183579
|| || | | ||||||| ||| ||||| || || ||
Sbjct 1023 CAAGCAAACAGGACTTTTCTTTGACCAGGTTTAAAGCCGTC 1063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634900778049000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |