Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq24802 105 8e-18 seq25269 84.2 3e-11 >seq24802 Length=2283 Score = 105 bits (116), Expect = 8e-18 Identities = 404/624 (65%), Gaps = 14/624 (2%) Strand=Plus/Minus Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415 ||||||||||| | || |||||| || ||||| ||||| || ||| | || | | Sbjct 2169 AATCAAAAGAACCTTGGCACCATCAAGTCATCGAACCTTTGTACTGAGATCATCGAGTAT 2110 Query 112416 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 112475 ||| | ||||||| ||| || |||||||| || || ||||| || || | |||| | Sbjct 2109 TCAGCCCCAGATGAGGTGGCGGTTTGTAACCTGGCCTCGATCGCGCTGCCGACGTATAT- 2051 Query 112476 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACA 112535 || ||| || | | ||||| |||| || ||||| || ||||| ||||| Sbjct 2050 ----CACCGACGGAGTC-TATGATTTCCAAAAGCTACACGAGGTGACGAAGGAAGTCACG 1996 Query 112536 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATC 112594 ||| | || | | || ||| |||| |||||||| ||| ||| || || Sbjct 1995 TGGAACTTGAATCGTATAATAGATGTGAATTACTACCCCGTCCCAGA-AGCTAAAAAGTC 1937 Query 112595 TAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATG-TATTCATTC 112653 || |||||||| ||||| || || |||| || | || | || |||| |||| Sbjct 1936 CAACATGAGACATCGTCCCATCGGAATCGGAGTAAACGGATTAGCAGATGCCTTTCAAAT 1877 Query 112654 TTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGA 112713 ||| || | |||| ||||| ||||| || || | ||||| | || || |||| Sbjct 1876 CTTGAAGCTTC-CATTCGATTCACCGGAAGCCAAAAAATTGAATGCTCAGATCTTCGAGA 1818 Query 112714 CAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATG 112773 | | |||||||| || ||||| || ||| | || | | || || |||| | Sbjct 1817 CGCTCTATCACGCAGCCCTTGAAGCCTCAAACGAGCTTGCCGTGTCGGAAGGCGCATACG 1758 Query 112774 AAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTG 112833 |||| ||| ||||| || ||| ||| | || |||| ||||||||||| || Sbjct 1757 AAACGTTTCCCGGTTCGCCCGCTAGTTTAGGAGAACTCCAATATGATATGTGGG-GCGTT 1699 Query 112834 AGACCAAGCTTCACTACG--ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCT 112891 | ||| | | || | | ||||| | ||| || ||| ||||||| | || | Sbjct 1698 ACACCCTCCGAC-CTGTGGAAATGGGATGATCTGAAAGAAAAGATCAAGGCCACTGGATT 1640 Query 112892 TCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAA 112951 | ||| |||||| | || |||||||| || || || ||| || ||| |||| Sbjct 1639 GAGGAACTCGCTTTTGCTTGCGCCAATGCCTACTGCTTCGACCAGTCAGATCATGGGCTT 1580 Query 112952 TAATGAATGCTTTGAACCCTACAC 112975 || ||||| ||||| || ||||| Sbjct 1579 CAACGAATGTTTTGAGCCGTACAC 1556 >seq25269 Length=7113 Score = 84.2 bits (92), Expect = 3e-11 Identities = 215/319 (67%), Gaps = 14/319 (4%) Strand=Plus/Plus Query 176764 ATCCGTCATGATCATGAGACGACCATACCG-AAG----CTCGGAAACATCTTGATAGTCC 176818 ||||||||||||||| | || ||||| || ||| |||| || | ||| | | Sbjct 1781 ATCCGTCATGATCATCAAACTCCCATATCGCAAGGATTCTCG---ACTAGT--ATATTTC 1835 Query 176819 TTACCCTGTTGAAGACCCAAGATCTTCTTGAGATCGTTGAA-CTCTTGGTTTGATGTGAG 176877 || || |||||||| |||| ||||| |||| || |||||| ||| ||| | | Sbjct 1836 TTGCCTTGTTGAAGTCCCATAATCTTTTTGATAT-GTTGAATCTCAGCGTTCGCCAACAA 1894 Query 176878 CTGTGTGACAGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTA 176937 || || || ||| || ||||| || | || |||||||| ||||| ||||| || Sbjct 1895 TTGAGTCCCACTGGCTTCTCGAACGTTTAATAATTTTCCACGAAGTGGGAAAACACCATA 1954 Query 176938 GTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTC 176997 | ||| || |||| || | | || ||||| || | | ||| || ||||| || || Sbjct 1955 ATTATCACGCCCAATGACTGTTAACCCAGCAACAGCCAATGATTTGGCTGAATCTCCTTC 2014 Query 176998 TGTCACGATGAGTGTACACT-TGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCA 177056 || | || | ||||||| |||| | || ||| ||||| || || ||||| || | Sbjct 2015 CGTTAAAATCAAAGTACACTCTGCC-GCTTTCTTCGTCCCCGCGTTATTGGCATCCTCTA 2073 Query 177057 ATTTGGGAATACCAGTAAT 177075 |||| ||| ||||| || Sbjct 2074 GTTTGACAATTCCAGTGAT 2092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620515635042000