Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq10901 95.1 1e-14 seq16375 84.2 3e-11 >seq10901 Length=2100 Score = 95.1 bits (104), Expect = 1e-14 Identities = 267/408 (65%), Gaps = 3/408 (1%) Strand=Plus/Minus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||||||||| ||||| || | ||| | || | ||| | | |||| | ||||| || | Sbjct 693 ACGATCAAATCGACCAGGTCTAAGTAATGCTTTATCTAATACATCAGCTCGATTTGTACC 634 Query 9251 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9310 || | |||||| | | | | | ||||||| |||||||| ||| || | ||| || Sbjct 633 AGCTAAGACAACTACATGAGCTGAAGTATCAAATCCATCCATTTCTACTAATAATTGATT 574 Query 9311 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGT--TGCTTTCCC 9368 || || ||| | ||||||||| || | || || | | | | |||||| || Sbjct 573 AAGCGTAGATTCTCTTTCATCATTTCCTCCAAATCCTCCTGATTTACCTCTTGCTTTACC 514 Query 9369 ACG-GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAA 9427 | ||||| |||||||| | || |||||||| ||| ||| | ||| || |||| Sbjct 513 AATCGCATCTATCTCATCTACAAATACAATACAAGGTGCATTCTTTTTGGCTGTTGCAAA 454 Query 9428 GAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9487 | ||| || || ||| | || || || |||||||| || ||||| | | | || Sbjct 453 CAAATCTCGTACTCTTGAAGGTCCTACTCCTACAAACATTTCTACAAATTCAGATCCTGA 394 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 | | | ||| || || | ||| || || | ||| ||| | | || ||||| Sbjct 393 AACTGATAAGAATGGCACTCCTGCTTCTCCTGCTGTTGCTTTGGCTAATAAGGTTTTACC 334 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 |||||||| ||| | |||| |||||| |||||||||||| || Sbjct 333 TGTACCTGGTGGACCTGAAAGGATGGCACCTTTTGGAATCTTGGCTCC 286 >seq16375 Length=4551 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 7194 AGAGATTGGGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAG 7253 ||||||||||| || || || || |||||||||| |||||||| ||| | |||||||| Sbjct 4179 AGAGATTGGGGGCATGCCAAAGATTATGTTGAAGGCATGTGGCGAATGTTACAACAAGAT 4238 Query 7254 GAAGCCGACGAATATGTAGTAGCAACGGGTGAGACCCAT 7292 | ||| || || ||||| |||| || ||||| || ||| Sbjct 4239 GTAGCAGAAGACTATGTTTTAGCTACCGGTGAAACACAT 4277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589765272639000