Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq20492 132 4e-25 seq8761 129 5e-24 seq964 102 7e-16 seq21451 87.8 1e-11 seq16220 86.0 5e-11 >seq20492 Length=5790 Score = 132 bits (146), Expect = 4e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 399569 ATATGACAAGGAGGTAATGCCAtttttttAATGTCGACAGGATTCCATAAACTTATAATT 399628 |||||||||||||| | ||||||||| | || ||||||||| ||||| ||| Sbjct 890 ATATGACAAGGAGGAAGTGCCATTTTAGATAAATCAGAAGGATTCCAAGCACTTAAAATG 831 Query 399629 ATTCTGCGATCATTTGGATTATTCATAATAGCATCAATACAATTATTTAATTGATCAATT 399688 ||||| |||||| |||||||| ||| || |||||| | |||||||||||||| Sbjct 830 ATTCTACGATCAATTGGATTAAATTGAATTTTATGAATACACTCTTTTAATTGATCAATA 771 Query 399689 CCTTGATCATGATAATCTGTTTTACAATTATCATATTTGGCTCCGAAATGTCTCATTTGA 399748 |||| |||||||||| |||| || | | ||||| || || ||||||||| |||| Sbjct 770 CCTTTTCCATGATAATCATCTTTAAAAGTTTTATATTCTGCACCAAAATGTCTCCATTGA 711 Query 399749 AATCCATAACCGGGGCCAATATCTCC 399774 ||||||||| || || | |||||| Sbjct 710 AATCCATAAATCGGTCCTAGATCTCC 685 >seq8761 Length=3720 Score = 129 bits (142), Expect = 5e-24 Identities = 177/245 (72%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 344422 AATGGAGTTGCATCTCCATATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATTCA 344481 ||||| || ||||| || | ||| | |||| | ||||||||| || ||||||||| Sbjct 2081 AATGGTGTAGCATCACCTTCATTTCCTGTGATTGTAGAAACTTTACTTAACAAACATTCA 2022 Query 344482 ATTAATTGACCTATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAGGA 344541 | ||| || || |||||||||||| || ||| || |||||||||||| ||||| ||| Sbjct 2021 ACTAAATGTCCAATCGTCATACGTGATGGGATAGCATGAGGATTAATAATGATATCCGGA 1962 Query 344542 ATTAATCCTGATTTTGTGAATGGAAGATCTGCACGATGAATTTTAAAT-CCAACTGTTCC 344600 | |||| ||| ||||| | |||| | | | || | |||| || ||||| || Sbjct 1961 CAAATTCCTTCAGATGTAAATGGCATATCTTCTTG-TCTATATAAAATCCCTACTGTACC 1903 Query 344601 TTTTTGTCCAGCTCTTGATGAGAATTTATCACCTACTGCTGGAATTCTTTCTGATCTAAC 344660 |||||||||| ||| |||| |||||||| ||| | | || |||||| ||||||| Sbjct 1902 TTTTTGTCCATGTCTAGATGCAAATTTATCTCCTGTTTCAGGTATTCTTGTAGATCTAAT 1843 Query 344661 TCGAA 344665 || || Sbjct 1842 TCTAA 1838 >seq964 Length=784 Score = 102 bits (112), Expect = 7e-16 Identities = 174/250 (70%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || |||||||||||||||||||| |||||||| | || || ||||| |||||||| | Sbjct 475 AACCCAGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCTGCTATCCTTTCTGGTGAT 534 Query 552270 ACTGATGA-AAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 ||| || || ||| ||| | || | || | |||||| | ||||| || || ||| | Sbjct 535 ACTTCCGAGAAGACT-CAAGACCTTCTTCTCTTGGATGTTGCACCTCTCTCGCTGGGTAT 593 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 || |||| || ||| | | ||| ||||||| |||| || || |||||| Sbjct 594 CGAGACAGCCGGTGGTGTCTTCACTGCTCTTATCCCCCGAAACACAACCATTCCTAACCG 653 Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448 ||| | | ||||| || || || | || || ||| ||| ||| | |||||| |||| Sbjct 654 AAAGTGTGAAGTATTCTCAACTTACGCCGACAACCAAGCTGGTGTCAACATTCAAGTTTT 713 Query 552449 TGAAGGAGAA 552458 || || ||| Sbjct 714 CGAGGGTGAA 723 >seq21451 Length=1854 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 390856 TTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTT 390915 |||| ||| || |||||||| |||| | | || |||||| ||| || ||| |||| Sbjct 1213 TTTCGTACCGTTCCATCATAAGCTACCATCACATCCTCTAACGCTTTCACCAATCTTCTC 1272 Query 390916 TGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCC 390975 ||||||||||| || ||||| || || | || |||| ||| | |||||| | || ||| Sbjct 1273 TGGATATAACCTGTCTCTGCTGTCTTTACAGCGGTATCAATCAAACCTTCACGACCGGCC 1332 Query 390976 ATAACTTGGAAGAAAAATTCC 390996 ||| | || ||||| || ||| Sbjct 1333 ATAGCATGAAAGAAGAACTCC 1353 >seq16220 Length=1922 Score = 86.0 bits (94), Expect = 5e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 563296 TTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGC 563355 ||||||||||| || || | | |||||||||||||||||||| || || | | ||| Sbjct 3 TTGTAATCAGCAAGGGTACGTCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGT 62 Query 563356 TGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 563390 ||||| || ||||| |||||||||||||| || || Sbjct 63 TGATCCGGTGGAATACCTTCTTTATCTTGGATCTT 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027750450195250