Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05-
22] 29,225 sequences; 62,222,430 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq20492 132 4e-25
seq8761 129 5e-24
seq964 102 7e-16
seq21451 87.8 1e-11
seq16220 86.0 5e-11
>seq20492
Length=5790
Score = 132 bits (146), Expect = 4e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 399569 ATATGACAAGGAGGTAATGCCAtttttttAATGTCGACAGGATTCCATAAACTTATAATT 399628
|||||||||||||| | ||||||||| | || ||||||||| ||||| |||
Sbjct 890 ATATGACAAGGAGGAAGTGCCATTTTAGATAAATCAGAAGGATTCCAAGCACTTAAAATG 831
Query 399629 ATTCTGCGATCATTTGGATTATTCATAATAGCATCAATACAATTATTTAATTGATCAATT 399688
||||| |||||| |||||||| ||| || |||||| | ||||||||||||||
Sbjct 830 ATTCTACGATCAATTGGATTAAATTGAATTTTATGAATACACTCTTTTAATTGATCAATA 771
Query 399689 CCTTGATCATGATAATCTGTTTTACAATTATCATATTTGGCTCCGAAATGTCTCATTTGA 399748
|||| |||||||||| |||| || | | ||||| || || ||||||||| ||||
Sbjct 770 CCTTTTCCATGATAATCATCTTTAAAAGTTTTATATTCTGCACCAAAATGTCTCCATTGA 711
Query 399749 AATCCATAACCGGGGCCAATATCTCC 399774
||||||||| || || | ||||||
Sbjct 710 AATCCATAAATCGGTCCTAGATCTCC 685
>seq8761
Length=3720
Score = 129 bits (142), Expect = 5e-24
Identities = 177/245 (72%), Gaps = 2/245 (1%)
Strand=Plus/Minus
Query 344422 AATGGAGTTGCATCTCCATATACCCCTTTAATTGCACAAACTTTACCTAGTAAACATTCA 344481
||||| || ||||| || | ||| | |||| | ||||||||| || |||||||||
Sbjct 2081 AATGGTGTAGCATCACCTTCATTTCCTGTGATTGTAGAAACTTTACTTAACAAACATTCA 2022
Query 344482 ATTAATTGACCTATCGTCATACGTTTGGGCATACAATTAGGATTAATAATAATATCAGGA 344541
| ||| || || |||||||||||| || ||| || |||||||||||| ||||| |||
Sbjct 2021 ACTAAATGTCCAATCGTCATACGTGATGGGATAGCATGAGGATTAATAATGATATCCGGA 1962
Query 344542 ATTAATCCTGATTTTGTGAATGGAAGATCTGCACGATGAATTTTAAAT-CCAACTGTTCC 344600
| |||| ||| ||||| | |||| | | | || | |||| || ||||| ||
Sbjct 1961 CAAATTCCTTCAGATGTAAATGGCATATCTTCTTG-TCTATATAAAATCCCTACTGTACC 1903
Query 344601 TTTTTGTCCAGCTCTTGATGAGAATTTATCACCTACTGCTGGAATTCTTTCTGATCTAAC 344660
|||||||||| ||| |||| |||||||| ||| | | || |||||| |||||||
Sbjct 1902 TTTTTGTCCATGTCTAGATGCAAATTTATCTCCTGTTTCAGGTATTCTTGTAGATCTAAT 1843
Query 344661 TCGAA 344665
|| ||
Sbjct 1842 TCTAA 1838
>seq964
Length=784
Score = 102 bits (112), Expect = 7e-16
Identities = 174/250 (70%), Gaps = 2/250 (1%)
Strand=Plus/Plus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
|| |||||||||||||||||||| |||||||| | || || ||||| |||||||| |
Sbjct 475 AACCCAGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCTGCTATCCTTTCTGGTGAT 534
Query 552270 ACTGATGA-AAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328
||| || || ||| ||| | || | || | |||||| | ||||| || || ||| |
Sbjct 535 ACTTCCGAGAAGACT-CAAGACCTTCTTCTCTTGGATGTTGCACCTCTCTCGCTGGGTAT 593
Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388
|| |||| || ||| | | ||| ||||||| |||| || || ||||||
Sbjct 594 CGAGACAGCCGGTGGTGTCTTCACTGCTCTTATCCCCCGAAACACAACCATTCCTAACCG 653
Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448
||| | | ||||| || || || | || || ||| ||| ||| | |||||| ||||
Sbjct 654 AAAGTGTGAAGTATTCTCAACTTACGCCGACAACCAAGCTGGTGTCAACATTCAAGTTTT 713
Query 552449 TGAAGGAGAA 552458
|| || |||
Sbjct 714 CGAGGGTGAA 723
>seq21451
Length=1854
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 390856 TTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTT 390915
|||| ||| || |||||||| |||| | | || |||||| ||| || ||| ||||
Sbjct 1213 TTTCGTACCGTTCCATCATAAGCTACCATCACATCCTCTAACGCTTTCACCAATCTTCTC 1272
Query 390916 TGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCC 390975
||||||||||| || ||||| || || | || |||| ||| | |||||| | || |||
Sbjct 1273 TGGATATAACCTGTCTCTGCTGTCTTTACAGCGGTATCAATCAAACCTTCACGACCGGCC 1332
Query 390976 ATAACTTGGAAGAAAAATTCC 390996
||| | || ||||| || |||
Sbjct 1333 ATAGCATGAAAGAAGAACTCC 1353
>seq16220
Length=1922
Score = 86.0 bits (94), Expect = 5e-11
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 563296 TTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGC 563355
||||||||||| || || | | |||||||||||||||||||| || || | | |||
Sbjct 3 TTGTAATCAGCAAGGGTACGTCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGT 62
Query 563356 TGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 563390
||||| || ||||| |||||||||||||| || ||
Sbjct 63 TGATCCGGTGGAATACCTTCTTTATCTTGGATCTT 97
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4027750450195250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |