Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05-
22] 29,225 sequences; 62,222,430 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq8761 127 1e-23
seq20492 120 2e-21
seq1707 107 1e-17
seq25150 86.0 4e-11
>seq8761
Length=3720
Score = 127 bits (140), Expect = 1e-23
Identities = 274/400 (69%), Gaps = 16/400 (4%)
Strand=Plus/Minus
Query 269113 CTCGTTAACAATTGTGTCGGTCCACGCGCTCTAGAGTGAGTTTTATCGCCCACCATTTGT 269172
|| ||||| | |||| || || | |||||||| ||| ||||||| |||||| |||
Sbjct 2288 CTAGTTAAGATTTGTACAGGACCTCTTGCTCTAGAATGAATTTTATCATTCACCATATGT 2229
Query 269173 TTTAAACGCTGATAATATGTCGGACCAATAAATATTTTGACATGCATTTTTTC-TCCCGT 269231
|| || | |||||||| || ||||||| | | | |||| | | ||||| ||| ||
Sbjct 2228 TTCAATCTTTGATAATAAGTTGGACCAAGATA-ACATTGAGCTCTAAGTTTTCGTCCAGT 2170
Query 269232 CATACCATTTGTCATTGTTTCATTTCCCCATGCTTCATATCCGTATGA---AACTAGTTC 269288
|||||| ||| |||| || | | || |||||| | | || || ||
Sbjct 2169 ATGACCATTATACATAATTTCTAAACCTCTAGATTGATATCCATTTTTCTTAAGTAAGTC 2110
Query 269289 ATCATTTATTTTATTAATATCTACACCTGTAAATGGTGTCGCATCACCATATACTCCTTT 269348
| | || || | || ||| | | |||||||| |||||||| | |||| |
Sbjct 2109 TGAAATCGCTTC--TACTGTC-ACATCACTGAATGGTGTAGCATCACCTTCATTTCCTGT 2053
Query 269349 AATAGCACATACTTTTCCTAATAGACATTCAATCAATTGTCCAATGGTCATACGTTTTGG 269408
|| | | | ||||| | ||| | |||||||| || |||||||| ||||||||| |||
Sbjct 2052 GATTGTAGAAACTTTACTTAACAAACATTCAACTAAATGTCCAATCGTCATACGTGATGG 1993
Query 269409 CATACAATTAGGATTAATAATAATATCTGGCACAAGTC---CAGATTTAGTAAATGGCAT 269465
||| || |||||||||||| ||||| || || || ||||| |||||||||||
Sbjct 1992 GATAGCATGAGGATTAATAATGATATCCGGACAAATTCCTTCAGAT---GTAAATGGCAT 1936
Query 269466 ATCTGCTCTATGAATTTTAAAT-CCAACTGTACCTTTTTG 269504
|||| || | | || | |||| || ||||||||||||||
Sbjct 1935 ATCTTCT-TGTCTATATAAAATCCCTACTGTACCTTTTTG 1897
>seq20492
Length=5790
Score = 120 bits (132), Expect = 2e-21
Identities = 160/221 (72%), Gaps = 1/221 (0%)
Strand=Plus/Minus
Query 330936 AAAATT-ATATAAAATATGACATGGAGGAAGTGCCATTTTATTAATATCCACTGGATTCC 330994
|||||| | | || |||||||| |||||||||||||||||| | ||| |||||||
Sbjct 904 AAAATTGACAAAACATATGACAAGGAGGAAGTGCCATTTTAGATAAATCAGAAGGATTCC 845
Query 330995 ATAAATTAATAATAATTCTTCTATCTGTCGGATTATTTTTAATTGCTTCGATACAttttt 331054
| | | | ||| ||||| | ||| | |||||| || |||| | ||||| | ||
Sbjct 844 AAGCACTTAAAATGATTCTACGATCAATTGGATTAAATTGAATTTTATGAATACACTCTT 785
Query 331055 ttAATTGATCAATTCCTTGCCCGCTGTAATCTTTTTTACAATTTTCATATGTTGCACCAA 331114
||||||||||||| |||| || ||||| | |||| || ||| |||| ||||||||
Sbjct 784 TTAATTGATCAATACCTTTTCCATGATAATCATCTTTAAAAGTTTTATATTCTGCACCAA 725
Query 331115 AATATCTCATTTGGAAACCATATCCAGGACCTATATCACCT 331155
||| |||| ||| || ||||| || |||| ||| |||
Sbjct 724 AATGTCTCCATTGAAATCCATAAATCGGTCCTAGATCTCCT 684
>seq1707
Length=1759
Score = 107 bits (118), Expect = 1e-17
Identities = 156/220 (71%), Gaps = 3/220 (1%)
Strand=Plus/Plus
Query 748692 GAtttttttAACAAACCTGTTTATTTAACAGTATCAAATCAATTACATTTAGAATGTTTT 748751
|| || ||||| |||||| |||| | ||||| |||| |||||||||||||||| ||||
Sbjct 1075 GAATTCTTTAATCAACCTGCTTATCTTACAGTTTCAAGTCAATTACATTTAGAAGCTTTT 1134
Query 748752 GCTCATGGATTAGGCTATGTTTATACAATAACACCAGCGACTCGTGGTGAACCTTCACAA 748811
| | |||||||||| ||||||||| | |||| | | | |||| ||| |||
Sbjct 1135 GTTAATGGATTAGGTAGAGTTTATACACTCGGACCATGTTTTAGAGCTGAAAATTCTCAA 1194
Query 748812 AGTACTAAACATTTAGCACATTTTTCTATGTTAGAAGTAGAA---TCATGTTTTGGTGAT 748868
| | | ||||||||| | |||| ||||||||||| ||| |||| || || ||
Sbjct 1195 ACCAATCGACATTTAGCTGAATTTTGGATGTTAGAAGTGGAACTTTCATTTTGTGAAGAA 1254
Query 748869 TTGAAAGATAATATGGATGTTGCTGAAAATTTTATAAAAT 748908
|| ||||| |||| | | |||| |||| || ||||
Sbjct 1255 TTAGAAGATCTTATGAACTTGTGTGAACATTTAATTAAAT 1294
>seq25150
Length=7301
Score = 86.0 bits (94), Expect = 4e-11
Identities = 128/179 (72%), Gaps = 2/179 (1%)
Strand=Plus/Plus
Query 296066 TTGAGAGAATTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATT 296125
|||| ||||| ||||||||||| ||| || ||||||| |||||||| | || | |||
Sbjct 115 TTGAAAGAATGGGAAGATGGATCGATTTTGATAATGATTATAAAACGTTAAATGTAGATT 174
Query 296126 TTATGGAATCTGTTATTTGGTCATTTAAACAACTTT-ATGAAAAGGAAATGATTTTTGAA 296184
|||||||| | || ||| ||| |||||||||| |||||| | | ||| | |
Sbjct 175 TTATGGAAAGTATTTGGTGGGTATTCAAACAACTTTGGACAAAAGGTCAAG-TTTATAGA 233
Query 296185 GGTTATAAAGTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGC 296243
| || || ||||||||||| ||| ||| | |||||| | ||| |||| || ||
Sbjct 234 GCAAGTAGGGTAATGCCTTATTCGACTTCTTGTACTACACCTCTTTCTAATTTCGAAGC 292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3266925597950300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |