Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq8761 127 1e-23 seq20492 120 2e-21 seq1707 107 1e-17 seq25150 86.0 4e-11 >seq8761 Length=3720 Score = 127 bits (140), Expect = 1e-23 Identities = 274/400 (69%), Gaps = 16/400 (4%) Strand=Plus/Minus Query 269113 CTCGTTAACAATTGTGTCGGTCCACGCGCTCTAGAGTGAGTTTTATCGCCCACCATTTGT 269172 || ||||| | |||| || || | |||||||| ||| ||||||| |||||| ||| Sbjct 2288 CTAGTTAAGATTTGTACAGGACCTCTTGCTCTAGAATGAATTTTATCATTCACCATATGT 2229 Query 269173 TTTAAACGCTGATAATATGTCGGACCAATAAATATTTTGACATGCATTTTTTC-TCCCGT 269231 || || | |||||||| || ||||||| | | | |||| | | ||||| ||| || Sbjct 2228 TTCAATCTTTGATAATAAGTTGGACCAAGATA-ACATTGAGCTCTAAGTTTTCGTCCAGT 2170 Query 269232 CATACCATTTGTCATTGTTTCATTTCCCCATGCTTCATATCCGTATGA---AACTAGTTC 269288 |||||| ||| |||| || | | || |||||| | | || || || Sbjct 2169 ATGACCATTATACATAATTTCTAAACCTCTAGATTGATATCCATTTTTCTTAAGTAAGTC 2110 Query 269289 ATCATTTATTTTATTAATATCTACACCTGTAAATGGTGTCGCATCACCATATACTCCTTT 269348 | | || || | || ||| | | |||||||| |||||||| | |||| | Sbjct 2109 TGAAATCGCTTC--TACTGTC-ACATCACTGAATGGTGTAGCATCACCTTCATTTCCTGT 2053 Query 269349 AATAGCACATACTTTTCCTAATAGACATTCAATCAATTGTCCAATGGTCATACGTTTTGG 269408 || | | | ||||| | ||| | |||||||| || |||||||| ||||||||| ||| Sbjct 2052 GATTGTAGAAACTTTACTTAACAAACATTCAACTAAATGTCCAATCGTCATACGTGATGG 1993 Query 269409 CATACAATTAGGATTAATAATAATATCTGGCACAAGTC---CAGATTTAGTAAATGGCAT 269465 ||| || |||||||||||| ||||| || || || ||||| ||||||||||| Sbjct 1992 GATAGCATGAGGATTAATAATGATATCCGGACAAATTCCTTCAGAT---GTAAATGGCAT 1936 Query 269466 ATCTGCTCTATGAATTTTAAAT-CCAACTGTACCTTTTTG 269504 |||| || | | || | |||| || |||||||||||||| Sbjct 1935 ATCTTCT-TGTCTATATAAAATCCCTACTGTACCTTTTTG 1897 >seq20492 Length=5790 Score = 120 bits (132), Expect = 2e-21 Identities = 160/221 (72%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 330936 AAAATT-ATATAAAATATGACATGGAGGAAGTGCCATTTTATTAATATCCACTGGATTCC 330994 |||||| | | || |||||||| |||||||||||||||||| | ||| ||||||| Sbjct 904 AAAATTGACAAAACATATGACAAGGAGGAAGTGCCATTTTAGATAAATCAGAAGGATTCC 845 Query 330995 ATAAATTAATAATAATTCTTCTATCTGTCGGATTATTTTTAATTGCTTCGATACAttttt 331054 | | | | ||| ||||| | ||| | |||||| || |||| | ||||| | || Sbjct 844 AAGCACTTAAAATGATTCTACGATCAATTGGATTAAATTGAATTTTATGAATACACTCTT 785 Query 331055 ttAATTGATCAATTCCTTGCCCGCTGTAATCTTTTTTACAATTTTCATATGTTGCACCAA 331114 ||||||||||||| |||| || ||||| | |||| || ||| |||| |||||||| Sbjct 784 TTAATTGATCAATACCTTTTCCATGATAATCATCTTTAAAAGTTTTATATTCTGCACCAA 725 Query 331115 AATATCTCATTTGGAAACCATATCCAGGACCTATATCACCT 331155 ||| |||| ||| || ||||| || |||| ||| ||| Sbjct 724 AATGTCTCCATTGAAATCCATAAATCGGTCCTAGATCTCCT 684 >seq1707 Length=1759 Score = 107 bits (118), Expect = 1e-17 Identities = 156/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 748692 GAtttttttAACAAACCTGTTTATTTAACAGTATCAAATCAATTACATTTAGAATGTTTT 748751 || || ||||| |||||| |||| | ||||| |||| |||||||||||||||| |||| Sbjct 1075 GAATTCTTTAATCAACCTGCTTATCTTACAGTTTCAAGTCAATTACATTTAGAAGCTTTT 1134 Query 748752 GCTCATGGATTAGGCTATGTTTATACAATAACACCAGCGACTCGTGGTGAACCTTCACAA 748811 | | |||||||||| ||||||||| | |||| | | | |||| ||| ||| Sbjct 1135 GTTAATGGATTAGGTAGAGTTTATACACTCGGACCATGTTTTAGAGCTGAAAATTCTCAA 1194 Query 748812 AGTACTAAACATTTAGCACATTTTTCTATGTTAGAAGTAGAA---TCATGTTTTGGTGAT 748868 | | | ||||||||| | |||| ||||||||||| ||| |||| || || || Sbjct 1195 ACCAATCGACATTTAGCTGAATTTTGGATGTTAGAAGTGGAACTTTCATTTTGTGAAGAA 1254 Query 748869 TTGAAAGATAATATGGATGTTGCTGAAAATTTTATAAAAT 748908 || ||||| |||| | | |||| |||| || |||| Sbjct 1255 TTAGAAGATCTTATGAACTTGTGTGAACATTTAATTAAAT 1294 >seq25150 Length=7301 Score = 86.0 bits (94), Expect = 4e-11 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 296066 TTGAGAGAATTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATT 296125 |||| ||||| ||||||||||| ||| || ||||||| |||||||| | || | ||| Sbjct 115 TTGAAAGAATGGGAAGATGGATCGATTTTGATAATGATTATAAAACGTTAAATGTAGATT 174 Query 296126 TTATGGAATCTGTTATTTGGTCATTTAAACAACTTT-ATGAAAAGGAAATGATTTTTGAA 296184 |||||||| | || ||| ||| |||||||||| |||||| | | ||| | | Sbjct 175 TTATGGAAAGTATTTGGTGGGTATTCAAACAACTTTGGACAAAAGGTCAAG-TTTATAGA 233 Query 296185 GGTTATAAAGTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGC 296243 | || || ||||||||||| ||| ||| | |||||| | ||| |||| || || Sbjct 234 GCAAGTAGGGTAATGCCTTATTCGACTTCTTGTACTACACCTCTTTCTAATTTCGAAGC 292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266925597950300