Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq16375 105 9e-18 >seq16375 Length=4551 Score = 105 bits (116), Expect = 9e-18 Identities = 172/246 (70%), Gaps = 4/246 (2%) Strand=Plus/Minus Query 48056 ACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCT 48115 ||||||| ||||||||||||||||| ||| || ||||||||||| || | || || | Sbjct 3798 ACCCATAAAGTTTTGCAACACCATAGGGACTTCGAGGATAGAAAGGAGTTTTTTCAGTTT 3739 Query 48116 GTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCC 48175 | ||||| || ||| |||||||||||||| || || |||||||| | | ||| Sbjct 3738 GAGGAGTTTCGACCACTTTACCATAAAGTTCTGAAGTAGAAGCTTGATAAAATCTAACAT 3679 Query 48176 TA--TCTTCCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATC 48233 | | | | |||| ||||| || || |||| ||||| || || | |||| Sbjct 3678 GACGAGTAAGACCACAAG--TACGGATCGCATCCAGCAATCTCAAAGTACCAAGTCCATC 3621 Query 48234 TGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAG 48293 | | ||||||||| || | ||| ||||| || || || || ||| || || |||| Sbjct 3620 TACATCACCAGTATATTCTGCCATATCAAATGACACTTTAACGTGAGATTGAGCAGCAAG 3561 Query 48294 ATTATA 48299 |||||| Sbjct 3560 ATTATA 3555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665251286577000