Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq16220 156 6e-33 seq23082 131 2e-25 seq964 123 3e-23 seq25279 95.1 2e-14 seq26816 91.5 2e-13 >seq16220 Length=1922 Score = 156 bits (172), Expect = 6e-33 Identities = 130/159 (82%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 || || || || ||||||||||||||||| || || || || || || || ||| |||| Sbjct 160 CTAACCGGGAAGACTATCACCCTCGAGGTCGAATCTTCCGATACCATTGACAACGTCAAG 101 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002 |||||||| |||||||| ||||| |||||||| ||||| ||||| | || || || || Sbjct 100 GCCAAGATCCAAGATAAAGAAGGTATTCCACCGGATCAACAACGTTTGATCTTCGCCGGA 41 Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||||| |||||||| ||||||||||| |||||||||||| Sbjct 40 AAACAACTTGAAGACGGACGTACCCTTGCTGATTACAAC 2 Score = 113 bits (124), Expect = 6e-20 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942 || || || ||||| ||||||||||||||||| || || ||||| ||||| ||| ||||| Sbjct 509 CTCACCGGCAAAACCATCACCCTCGAGGTTGAATCTTCTGACACCATCGACAACGTCAAA 450 Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTT 171994 ||||||||||| || ||||| ||||| ||||| || || ||||| | |||| Sbjct 449 GCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAACAACGTTTGATTT 398 >seq23082 Length=2745 Score = 131 bits (144), Expect = 2e-25 Identities = 185/256 (72%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 195733 CTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTG 195792 ||||| || | || || ||||| || ||||| || | | || || ||| | ||| Sbjct 1352 CTTCAACGACGCTCAGCGTCAGGCAACCAAGGATGCCGGTATGATCGCTGGTTTGAACGT 1293 Query 195793 TCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAA 195852 |||| | ||| |||| || ||||| || || || ||||| |||||||| ||||||| ||| Sbjct 1292 TCTTCGTATTGTCAACGAGCCAACCGCCGCCGCTATTGCCTATGGTCTTGACAAGACCAA 1233 Query 195853 GGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACT 195912 || ||| | |||| |||| | | ||||| || |||||||| || |||||||| || Sbjct 1232 GGGTGAACG-ACAAATC-ATTG-TGTACGATCTTGGAGGTGGTACCTTCGATGTCTCTCT 1176 Query 195913 TCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGG 195972 || || || | ||| | || || || |||||| ||||||||||| || | || Sbjct 1175 CCTTTCCATCGATGAGGGTGTCTTTGAGGTGTTGGCTACAGCTGGTGATACCCACTTGGG 1116 Query 195973 TGGTGAAGATTTCGAT 195988 |||||||||||||||| Sbjct 1115 TGGTGAAGATTTCGAT 1100 >seq964 Length=784 Score = 123 bits (136), Expect = 3e-23 Identities = 204/293 (70%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 196364 AACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATT 196423 ||||| | |||||||| ||||| || ||||| || ||||| || || ||||||||||| Sbjct 463 AACAAGTCTATCAACCCAGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCTGCTATC 522 Query 196424 CTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTA 196483 || || |||| | | || ||||| ||||| || | ||||||||||| | Sbjct 523 CTTTCTGGTGATACTTCCGAGAAGACTCAAGACCTTCTTCTCTTGGATGTTGCACCTCTC 582 Query 196484 TCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACT 196543 || |||||| | || ||||| |||||||| | ||| |||| | |||||||| Sbjct 583 TCGCTGGGTATCGAGACAGCCGGTGGTGTCTTCACTGCTCTTATCCCCCGAAACACAACC 642 Query 196544 ATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCAT 196603 ||||| | ||| |||| || ||||| || |||| || ||| | ||||| | Sbjct 643 ATTCCTAACCGAAAGTGTGAAGTATTCTCAACTTACGCCGACAACCAAGCTGGTGTCAAC 702 Query 196604 ATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG 196656 |||||||| | || || ||||| | ||| | ||||| ||||| || ||||| Sbjct 703 ATTCAAGTTTTCGAGGGTGAACGTGCTCGTACCAAGGACAACCACCT-CTTGG 754 Score = 116 bits (128), Expect = 5e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 196079 ACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATT 196138 ||||| || ||||||||||| ||||| ||||| || | || || || | ||||| Sbjct 112 ACTGCTTGCGAACGTGCCAAGCGAACCCTCTCCTCCGCTGCCCAGACCTCTATCGAGATC 171 Query 196139 GATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAG 196198 || || | ||||| || |||||||||||||| || |||||||||| || || || || Sbjct 172 GACTCTCTTTTTGAGGGTGTTGACTTCTATACATCTCTTACCCGTGCTCGATTCGAGGAA 231 Query 196199 TTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCA 196258 | | || ||||| |||||| ||||| |||||||| |||| | | ||| | Sbjct 232 CTCTGCCAAGACTTGTTCAGGAAGACCATGGAGCCTGTTGAGAAAGTGTTGAGAGACTCC 291 Query 196259 AAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCC 196317 ||||| || ||| | || || |||| || || | || || || || |||||||| || Sbjct 292 AAGATTGACAAGGCCAACGTGCATGAGATCGTATTAGTTGGTGGTTCCACCCGTATCCC 350 >seq25279 Length=2861 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 171871 TTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATC 171930 ||||| | | ||| || || || |||||||| |||||||| || | | |||||||| Sbjct 2024 TTTGTACACAGCCTCACGGGTAAGACTATCACTCTCGAGGTCGAAGCTGCCGACACAATT 2083 Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990 || || | || ||||||||||||| |||||||||||||| || || || |||||||| Sbjct 2084 GACAATGTGAAGACCAAGATTCAAGAAAAGGAAGGCATTCCCCCGGACCAACAACGACTC 2143 Query 171991 AT 171992 || Sbjct 2144 AT 2145 >seq26816 Length=2761 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 |||||||||||||||| | ||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct 2451 AGCTATTGGTATCGATCTCGGAACCACTTACTCCTGTGTGGGTGTTTGGCAAAACGATCG 2510 Query 195358 TGTAGAGATTATCCCGAATGACC 195380 || ||||| || | ||||||| Sbjct 2511 AGTGGAGATCATTGCCAATGACC 2533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657622074642000