Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05-
22] 29,225 sequences; 62,222,430 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq16220 156 6e-33
seq23082 131 2e-25
seq964 123 3e-23
seq25279 95.1 2e-14
seq26816 91.5 2e-13
>seq16220
Length=1922
Score = 156 bits (172), Expect = 6e-33
Identities = 130/159 (82%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942
|| || || || ||||||||||||||||| || || || || || || || ||| ||||
Sbjct 160 CTAACCGGGAAGACTATCACCCTCGAGGTCGAATCTTCCGATACCATTGACAACGTCAAG 101
Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGT 172002
|||||||| |||||||| ||||| |||||||| ||||| ||||| | || || || ||
Sbjct 100 GCCAAGATCCAAGATAAAGAAGGTATTCCACCGGATCAACAACGTTTGATCTTCGCCGGA 41
Query 172003 AAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
||||| |||||||| ||||||||||| ||||||||||||
Sbjct 40 AAACAACTTGAAGACGGACGTACCCTTGCTGATTACAAC 2
Score = 113 bits (124), Expect = 6e-20
Identities = 92/112 (82%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 171883 CTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAA 171942
|| || || ||||| ||||||||||||||||| || || ||||| ||||| ||| |||||
Sbjct 509 CTCACCGGCAAAACCATCACCCTCGAGGTTGAATCTTCTGACACCATCGACAACGTCAAA 450
Query 171943 GCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTT 171994
||||||||||| || ||||| ||||| ||||| || || ||||| | ||||
Sbjct 449 GCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAACAACGTTTGATTT 398
>seq23082
Length=2745
Score = 131 bits (144), Expect = 2e-25
Identities = 185/256 (72%), Gaps = 3/256 (1%)
Strand=Plus/Minus
Query 195733 CTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTG 195792
||||| || | || || ||||| || ||||| || | | || || ||| | |||
Sbjct 1352 CTTCAACGACGCTCAGCGTCAGGCAACCAAGGATGCCGGTATGATCGCTGGTTTGAACGT 1293
Query 195793 TCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAA 195852
|||| | ||| |||| || ||||| || || || ||||| |||||||| ||||||| |||
Sbjct 1292 TCTTCGTATTGTCAACGAGCCAACCGCCGCCGCTATTGCCTATGGTCTTGACAAGACCAA 1233
Query 195853 GGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACT 195912
|| ||| | |||| |||| | | ||||| || |||||||| || |||||||| ||
Sbjct 1232 GGGTGAACG-ACAAATC-ATTG-TGTACGATCTTGGAGGTGGTACCTTCGATGTCTCTCT 1176
Query 195913 TCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGG 195972
|| || || | ||| | || || || |||||| ||||||||||| || | ||
Sbjct 1175 CCTTTCCATCGATGAGGGTGTCTTTGAGGTGTTGGCTACAGCTGGTGATACCCACTTGGG 1116
Query 195973 TGGTGAAGATTTCGAT 195988
||||||||||||||||
Sbjct 1115 TGGTGAAGATTTCGAT 1100
>seq964
Length=784
Score = 123 bits (136), Expect = 3e-23
Identities = 204/293 (70%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 196364 AACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATT 196423
||||| | |||||||| ||||| || ||||| || ||||| || || |||||||||||
Sbjct 463 AACAAGTCTATCAACCCAGATGAGGCTGTTGCCTACGGTGCCGCTGTCCAGGCTGCTATC 522
Query 196424 CTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTA 196483
|| || |||| | | || ||||| ||||| || | ||||||||||| |
Sbjct 523 CTTTCTGGTGATACTTCCGAGAAGACTCAAGACCTTCTTCTCTTGGATGTTGCACCTCTC 582
Query 196484 TCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACT 196543
|| |||||| | || ||||| |||||||| | ||| |||| | ||||||||
Sbjct 583 TCGCTGGGTATCGAGACAGCCGGTGGTGTCTTCACTGCTCTTATCCCCCGAAACACAACC 642
Query 196544 ATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCAT 196603
||||| | ||| |||| || ||||| || |||| || ||| | ||||| |
Sbjct 643 ATTCCTAACCGAAAGTGTGAAGTATTCTCAACTTACGCCGACAACCAAGCTGGTGTCAAC 702
Query 196604 ATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGG 196656
|||||||| | || || ||||| | ||| | ||||| ||||| || |||||
Sbjct 703 ATTCAAGTTTTCGAGGGTGAACGTGCTCGTACCAAGGACAACCACCT-CTTGG 754
Score = 116 bits (128), Expect = 5e-21
Identities = 169/239 (71%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 196079 ACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGATT 196138
||||| || ||||||||||| ||||| ||||| || | || || || | |||||
Sbjct 112 ACTGCTTGCGAACGTGCCAAGCGAACCCTCTCCTCCGCTGCCCAGACCTCTATCGAGATC 171
Query 196139 GATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAG 196198
|| || | ||||| || |||||||||||||| || |||||||||| || || || ||
Sbjct 172 GACTCTCTTTTTGAGGGTGTTGACTTCTATACATCTCTTACCCGTGCTCGATTCGAGGAA 231
Query 196199 TTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCA 196258
| | || ||||| |||||| ||||| |||||||| |||| | | ||| |
Sbjct 232 CTCTGCCAAGACTTGTTCAGGAAGACCATGGAGCCTGTTGAGAAAGTGTTGAGAGACTCC 291
Query 196259 AAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCC 196317
||||| || ||| | || || |||| || || | || || || || |||||||| ||
Sbjct 292 AAGATTGACAAGGCCAACGTGCATGAGATCGTATTAGTTGGTGGTTCCACCCGTATCCC 350
>seq25279
Length=2861
Score = 95.1 bits (104), Expect = 2e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 171871 TTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATC 171930
||||| | | ||| || || || |||||||| |||||||| || | | ||||||||
Sbjct 2024 TTTGTACACAGCCTCACGGGTAAGACTATCACTCTCGAGGTCGAAGCTGCCGACACAATT 2083
Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990
|| || | || ||||||||||||| |||||||||||||| || || || ||||||||
Sbjct 2084 GACAATGTGAAGACCAAGATTCAAGAAAAGGAAGGCATTCCCCCGGACCAACAACGACTC 2143
Query 171991 AT 171992
||
Sbjct 2144 AT 2145
>seq26816
Length=2761
Score = 91.5 bits (100), Expect = 2e-13
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357
|||||||||||||||| | ||||| |||||||| ||||| ||||| |||||||| |||||
Sbjct 2451 AGCTATTGGTATCGATCTCGGAACCACTTACTCCTGTGTGGGTGTTTGGCAAAACGATCG 2510
Query 195358 TGTAGAGATTATCCCGAATGACC 195380
|| ||||| || | |||||||
Sbjct 2511 AGTGGAGATCATTGCCAATGACC 2533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657622074642000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |