Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq25081 95.1 2e-14 seq25080 95.1 2e-14 seq8761 91.5 2e-13 seq20492 84.2 3e-11 >seq25081 Length=5636 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 116526 ATTATGGGTCGGAAAACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGA 116585 |||||||| | ||||||||||| |||||||| || ||||||||||| ||| |||||||| Sbjct 1247 ATTATGGGAAGAAAAACATGGGAAAGTATTCCAAAGAAATTTAAACCTTTAGAAAATCGA 1306 Query 116586 ATAAATATAATAGTTTC 116602 || |||||||| ||||| Sbjct 1307 ATTAATATAATTGTTTC 1323 >seq25080 Length=3840 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 116526 ATTATGGGTCGGAAAACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGA 116585 |||||||| | ||||||||||| |||||||| || ||||||||||| ||| |||||||| Sbjct 1247 ATTATGGGAAGAAAAACATGGGAAAGTATTCCAAAGAAATTTAAACCTTTAGAAAATCGA 1306 Query 116586 ATAAATATAATAGTTTC 116602 || |||||||| ||||| Sbjct 1307 ATTAATATAATTGTTTC 1323 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 116526 ATTATGGGTCGGAAAACATGGGATAGTATTCCTAATAAATTTAAACCATTAAAAAATCGA 116585 |||||||| | ||||||||||| |||||||| || ||||||||||| ||| |||||||| Sbjct 3756 ATTATGGGAAGAAAAACATGGGAAAGTATTCCAAAGAAATTTAAACCTTTAGAAAATCGA 3815 Query 116586 ATAAATATAATAGTTTC 116602 || |||||||| ||||| Sbjct 3816 ATTAATATAATTGTTTC 3832 >seq8761 Length=3720 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 193443 ATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTGTGGTAT 193501 |||||||||| ||| ||||||||| || || |||| | ||||||| || || || Sbjct 1858 ATACCTGAAACAGGAGATAAATTTGCATCTAGACATGGAC-AAAAAGGTACAGTAGGGAT 1916 Query 193502 GATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTAT 193561 | ||| |||||||||||||||||||||| || ||| || || ||||| ||||| Sbjct 1917 TTTATATAGACAAGAAGATATGCCATTTACATCTGAAGGAATTTGTCCGGATATCATTAT 1976 Query 193562 TAATCCAAATTGTATTCCATCCAGAATGACCATT 193595 |||||| || ||| ||||| | ||||| ||| Sbjct 1977 TAATCCTCATGCTATCCCATCACGTATGACGATT 2010 >seq20492 Length=5790 Score = 84.2 bits (92), Expect = 3e-11 Identities = 165/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 168476 AACTATCCCACTTCTTACTACCaaaaaaaTTGTATACACTAACATTCTTAAA-GAACTTT 168534 |||| | ||| | || || ||||||||| | | |||| | | || || | ||| | Sbjct 507 AACTTTACCATTACTAACCACCAAAAAAGTCTT-TACAAAAGCCATCATACATGAATTAC 565 Query 168535 TATGGGTTATAAAAGGTTCAACTGATTCAAAACAATTAA-ATGATATAGGTGTTAAAGTT 168593 ||||| |||||||||| ||||| ||| | ||||| || | | ||| || || | Sbjct 566 TATGGTTTATAAAAGGATCAACCTCATCACTAGAATTATCATCAAA-AGGAGTGAATATC 624 Query 168594 TGGAACGATAATGGTTCTCGTGAATTTTTAGATT-TATGTGGTTTTACCGAAAGAAAAGA 168652 ||||| | ||||| |||| | |||| | ||| || || || |||||| ||| Sbjct 625 TGGAATGGAAATGGATCTCAAACTTATTTAAAGAGTATA-GGATTAACAGAAAGATCAGA 683 Query 168653 AGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATA 168708 ||| ||| |||| || |||||||||||||||||||||||| || || |||||| Sbjct 684 AGGAGATCTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATA 739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634945561683000