Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq20492 104 3e-17 seq25081 100 4e-16 seq25080 100 4e-16 seq8761 86.0 8e-12 >seq20492 Length=5790 Score = 104 bits (114), Expect = 3e-17 Identities = 276/411 (67%), Gaps = 18/411 (4%) Strand=Plus/Plus Query 171561 AACTATACCATTACTTACTACaaaaaaaaTTGTATATACTAAT---ATCCTTAAAGAACT 171617 |||| |||||||||| || || |||||| || | ||| || ||| | | ||| | Sbjct 507 AACTTTACCATTACTAACCACCAAAAAA---GTCTTTACAAAAGCCATCATACATGAATT 563 Query 171618 TTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAA-ATGATATAGGTGTTAAAG 171676 ||||| |||| ||||| ||||| ||| | ||||| || | | ||| || || Sbjct 564 ACTATGGTTTATAAAAGGATCAACCTCATCACTAGAATTATCATCAAA-AGGAGTGAATA 622 Query 171677 TTTGGAATGATAATGGTTCTCGTGAATTTTTAGATT-TATGCGGGTTTACTGAAAGAAAA 171735 | ||||||| ||||| |||| | |||| | ||| || || || |||||| | Sbjct 623 TCTGGAATGGAAATGGATCTCAAACTTATTTAAAGAGTATA-GGATTAACAGAAAGATCA 681 Query 171736 GAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATC 171795 ||||| ||| |||| || |||||||||||||||||||||||| || || |||||| Sbjct 682 GAAGGAGATCTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATA-A 740 Query 171796 GACTGTTATACA-GATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTAATAC 171854 ||| ||| | | ||||| ||| |||| | || ||||||| | |||| ||| Sbjct 741 AACTTTTAAAGATGATTATCATGGAAAAGGTATTGATCAATTAAAAGAGTGTATTCATAA 800 Query 171855 TTTACAAAACAACCCA---GAAAGTAGAAGGATGTTAATTGATAGTTGGAATGTACCTCA 171911 | ||| || ||| || |||||| || |||| || ||||||| || | Sbjct 801 AATTCAATTTAATCCAATTGATCGTAGAATCATTTTAAGTG---CTTGGAATCCTTCTGA 857 Query 171912 ACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGT 171962 | |||||||| ||||||||||| || | || ||||||||||| Sbjct 858 TTTATCTAAAATGGCACTTCCTCCTTGTCATATGTTTTGTCAATTTTATGT 908 >seq25081 Length=5636 Score = 100 bits (110), Expect = 4e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 117004 AAAAAATGCTGTTATTATGGGTCGAAAAACATGGGATAGTATTCCTAATAAATTTAAACC 117063 ||| |||| | |||||||| ||||||||||||| |||||||| || ||||||||||| Sbjct 1234 AAAGAATGTGATGATTATGGGAAGAAAAACATGGGAAAGTATTCCAAAGAAATTTAAACC 1293 Query 117064 ATTAAAAAATCGAATAAATATAATAGTTTC 117093 ||| |||||||||| |||||||| ||||| Sbjct 1294 TTTAGAAAATCGAATTAATATAATTGTTTC 1323 >seq25080 Length=3840 Score = 100 bits (110), Expect = 4e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 117004 AAAAAATGCTGTTATTATGGGTCGAAAAACATGGGATAGTATTCCTAATAAATTTAAACC 117063 ||| |||| | |||||||| ||||||||||||| |||||||| || ||||||||||| Sbjct 1234 AAAGAATGTGATGATTATGGGAAGAAAAACATGGGAAAGTATTCCAAAGAAATTTAAACC 1293 Query 117064 ATTAAAAAATCGAATAAATATAATAGTTTC 117093 ||| |||||||||| |||||||| ||||| Sbjct 1294 TTTAGAAAATCGAATTAATATAATTGTTTC 1323 Score = 100 bits (110), Expect = 4e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 117004 AAAAAATGCTGTTATTATGGGTCGAAAAACATGGGATAGTATTCCTAATAAATTTAAACC 117063 ||| |||| | |||||||| ||||||||||||| |||||||| || ||||||||||| Sbjct 3743 AAAGAATGTGATGATTATGGGAAGAAAAACATGGGAAAGTATTCCAAAGAAATTTAAACC 3802 Query 117064 ATTAAAAAATCGAATAAATATAATAGTTTC 117093 ||| |||||||||| |||||||| ||||| Sbjct 3803 TTTAGAAAATCGAATTAATATAATTGTTTC 3832 >seq8761 Length=3720 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 192996 ATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTGTGGTAT 193054 |||||||||| ||| ||||||||| || || |||| | ||||||| || || || Sbjct 1858 ATACCTGAAACAGGAGATAAATTTGCATCTAGACATGGAC-AAAAAGGTACAGTAGGGAT 1916 Query 193055 GATTTATTCACAAGAAGATATGCCATTTACAACTTCAGGTATGGTACCAGATATTATTAT 193114 | ||| |||||||||||||||||||||| || ||| || || ||||| ||||| Sbjct 1917 TTTATATAGACAAGAAGATATGCCATTTACATCTGAAGGAATTTGTCCGGATATCATTAT 1976 Query 193115 TAATCCAAATTGTATTCCGTCCAGAATGACCATT 193148 |||||| || ||| || || | ||||| ||| Sbjct 1977 TAATCCTCATGCTATCCCATCACGTATGACGATT 2010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628301589696000