Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05-
22] 29,225 sequences; 62,222,430 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq20492 105 5e-17
seq964 96.9 3e-14
seq25269 91.5 1e-12
>seq20492
Length=5790
Score = 105 bits (116), Expect = 5e-17
Identities = 148/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 426638 AGAAGGAGATATTGGTCCAGGATACGGTTTTCAAATGAGATATTGGGGAGCTGAGTACAC 426697
|||||||||| | || || || || |||||| |||| ||| || || || || |
Sbjct 681 AGAAGGAGATCTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATAA 740
Query 426698 TGATTGTAAAACATCTTACCAAGGACAAGGTATTGATCAATTAAACAAATGTATTGAATC 426757
|| |||| ||| || ||| ||||||||||||||||||| | |||||| |
Sbjct 741 AACTTTTAAAGATGATTATCATGGAAAAGGTATTGATCAATTAAAAGAGTGTATTCATAA 800
Query 426758 TATTCAAAATAATCCTCACGACAGAAGAATCATGATAAATCTTTGGAATTGTTCTGATTT 426817
|||||| |||||| || | |||||||| ||| | ||||||| |||||||||
Sbjct 801 AATTCAATTTAATCCAATTGATCGTAGAATCATTTTAAGTGCTTGGAATCCTTCTGATTT 860
Query 426818 AGATAAAATGGCACTTGCACCATGTCAT 426845
| ||||||||||||| | || ||||||
Sbjct 861 ATCTAAAATGGCACTTCCTCCTTGTCAT 888
>seq964
Length=784
Score = 96.9 bits (106), Expect = 3e-14
Identities = 172/251 (69%), Gaps = 0/251 (0%)
Strand=Plus/Minus
Query 281555 CGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT 281614
|||||||||||||||| ||| || | || ||| ||| || || | ||||||| |||
Sbjct 725 CGTTCACCCTCGAAAACTTGAATGTTGACACCAGCTTGGTTGTCGGCGTAAGTTGAGAAT 666
Query 281615 ACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 281674
||| | ||| |||||| |||||||||| |||| | || | | ||||
Sbjct 665 ACTTCACACTTTCGGTTAGGAATGGTTGTGTTTCGGGGGATAAGAGCAGTGAAGACACCA 606
Query 281675 CCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 281734
|| ||||| || | ||| || || ||||| | ||||| | || | || | ||||
Sbjct 605 CCGGCTGTCTCGATACCCAGCGAGAGAGGTGCAACATCCAAGAGAAGAAGGTCTTGAGTC 546
Query 281735 TTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCT 281794
|| || ||| | |||| ||| ||||| || || | ||| ||||| || ||||||||
Sbjct 545 TTCTCGGAAGTATCACCAGAAAGGATAGCAGCCTGGACAGCGGCACCGTAGGCAACAGCC 486
Query 281795 TCATCAGGATT 281805
||||| || ||
Sbjct 485 TCATCTGGGTT 475
>seq25269
Length=7113
Score = 91.5 bits (100), Expect = 1e-12
Identities = 143/200 (72%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356
||||| | ||||| || || ||||||||||| ||| |||| ||| | |||| | |
Sbjct 2032 TGTACTTTGATTTTAACGGAAGGAGATTCAGCCAAATCATTGGCTGTTGCTGGGTTAACA 1973
Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416
|| ||||| | ||| ||||||| |||||||||||| | |||||| | || || ||| |
Sbjct 1972 GTCATTGGGCGTGATAATTATGGTGTTTTCCCACTTCGTGGAAAATTATTAAACGTTCGA 1913
Query 400417 GATGCTAGTCCTa--aaaaaaTTGCCGATAATGAGGAAATTACAGCA-ATCaaaaaaaTT 400473
|| || ||| | || ||| || || | || ||| || || |||||||| |||
Sbjct 1912 GAAGCCAGTGGGACTCAATTGTTGGCG--AACGCTGAGATT-CAACATATCAAAAAGATT 1856
Query 400474 GTTGGACTTGAACAAGGAAA 400493
| |||||| ||||||| ||
Sbjct 1855 ATGGGACTTCAACAAGGCAA 1836
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739195576004850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |