Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq20492 105 5e-17 seq964 96.9 3e-14 seq25269 91.5 1e-12 >seq20492 Length=5790 Score = 105 bits (116), Expect = 5e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 426638 AGAAGGAGATATTGGTCCAGGATACGGTTTTCAAATGAGATATTGGGGAGCTGAGTACAC 426697 |||||||||| | || || || || |||||| |||| ||| || || || || | Sbjct 681 AGAAGGAGATCTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATAA 740 Query 426698 TGATTGTAAAACATCTTACCAAGGACAAGGTATTGATCAATTAAACAAATGTATTGAATC 426757 || |||| ||| || ||| ||||||||||||||||||| | |||||| | Sbjct 741 AACTTTTAAAGATGATTATCATGGAAAAGGTATTGATCAATTAAAAGAGTGTATTCATAA 800 Query 426758 TATTCAAAATAATCCTCACGACAGAAGAATCATGATAAATCTTTGGAATTGTTCTGATTT 426817 |||||| |||||| || | |||||||| ||| | ||||||| ||||||||| Sbjct 801 AATTCAATTTAATCCAATTGATCGTAGAATCATTTTAAGTGCTTGGAATCCTTCTGATTT 860 Query 426818 AGATAAAATGGCACTTGCACCATGTCAT 426845 | ||||||||||||| | || |||||| Sbjct 861 ATCTAAAATGGCACTTCCTCCTTGTCAT 888 >seq964 Length=784 Score = 96.9 bits (106), Expect = 3e-14 Identities = 172/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 281555 CGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAAT 281614 |||||||||||||||| ||| || | || ||| ||| || || | ||||||| ||| Sbjct 725 CGTTCACCCTCGAAAACTTGAATGTTGACACCAGCTTGGTTGTCGGCGTAAGTTGAGAAT 666 Query 281615 ACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCA 281674 ||| | ||| |||||| |||||||||| |||| | || | | |||| Sbjct 665 ACTTCACACTTTCGGTTAGGAATGGTTGTGTTTCGGGGGATAAGAGCAGTGAAGACACCA 606 Query 281675 CCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGT 281734 || ||||| || | ||| || || ||||| | ||||| | || | || | |||| Sbjct 605 CCGGCTGTCTCGATACCCAGCGAGAGAGGTGCAACATCCAAGAGAAGAAGGTCTTGAGTC 546 Query 281735 TTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCT 281794 || || ||| | |||| ||| ||||| || || | ||| ||||| || |||||||| Sbjct 545 TTCTCGGAAGTATCACCAGAAAGGATAGCAGCCTGGACAGCGGCACCGTAGGCAACAGCC 486 Query 281795 TCATCAGGATT 281805 ||||| || || Sbjct 485 TCATCTGGGTT 475 >seq25269 Length=7113 Score = 91.5 bits (100), Expect = 1e-12 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| | ||||| || || ||||||||||| ||| |||| ||| | |||| | | Sbjct 2032 TGTACTTTGATTTTAACGGAAGGAGATTCAGCCAAATCATTGGCTGTTGCTGGGTTAACA 1973 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || ||||| | ||| ||||||| |||||||||||| | |||||| | || || ||| | Sbjct 1972 GTCATTGGGCGTGATAATTATGGTGTTTTCCCACTTCGTGGAAAATTATTAAACGTTCGA 1913 Query 400417 GATGCTAGTCCTa--aaaaaaTTGCCGATAATGAGGAAATTACAGCA-ATCaaaaaaaTT 400473 || || ||| | || ||| || || | || ||| || || |||||||| ||| Sbjct 1912 GAAGCCAGTGGGACTCAATTGTTGGCG--AACGCTGAGATT-CAACATATCAAAAAGATT 1856 Query 400474 GTTGGACTTGAACAAGGAAA 400493 | |||||| ||||||| || Sbjct 1855 ATGGGACTTCAACAAGGCAA 1836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739195576004850