Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq6930 156 3e-33 seq20492 132 4e-26 >seq6930 Length=2728 Score = 156 bits (172), Expect = 3e-33 Identities = 283/410 (69%), Gaps = 13/410 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || || |||||||| ||||| | || |||| ||| || |||| || ||||| Sbjct 1400 CCCAAGATCGTCAATGGTCCCGAAATTCTCAACAAATTTGTGGGAGAATCCGAGAAAAAT 1341 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | ||| | |||||||| ||||||| |||| | ||| | |||| | || || Sbjct 1340 ATTCGAGAGCTATTTGCTGATGCTGAAGTAGAATACAAA-GCGAAGGGAGATGAA--TCA 1284 Query 19549 ---TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---- 19601 || |||||||| || | |||||||||||||| || ||||| || ||||| || Sbjct 1283 GGCTTACACATTATCATTTTCGATGAATTGGACGCGATTTGTAAACAGAGAGGATCAACG 1224 Query 19602 --TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGT 19659 ||||| | |||||| || | |||||||||||||| || || || | |||||| Sbjct 1223 GGTGGTGGGACTGGAGTGGGCGATTCGGTTGTCAATCAACTTCTCTCCAAGATGGACGGT 1164 Query 19660 GTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGAC 19719 || | ||||| || ||||| || | ||||| ||||| ||| | | || | || ||| Sbjct 1163 GTAGATCAACTTAACAATATCTTGATCATTGGGATGACCAATCGTTTAGACATGATTGAC 1104 Query 19720 AGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAA 19779 || | |||||||| ||||| || ||| | | || ||||| || || ||||| Sbjct 1103 GAAGCACTCTTACGACCTGGTCGATTAGAAGTTCACATGGAAATCTCTTTGCCTGATGAG 1044 Query 19780 TGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATG-CGACAAA 19828 |||| || | | ||||| ||||| ||||| ||| ||| |||||| Sbjct 1043 GGTGGTCGACTACAGATTTTGAACATCCATACTGCAAAGATGAGGACAAA 994 >seq20492 Length=5790 Score = 132 bits (146), Expect = 4e-26 Identities = 277/405 (68%), Gaps = 12/405 (3%) Strand=Plus/Plus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 || || || ||||| || |||||| | ||| |||| ||| | | ||| | ||||| Sbjct 511 TTACCATTACTAACCACCAAAAAAGTCTTTACAAAAGCCATCATACATGAATTACTATGG 570 Query 40752 TTTATCAAAGGTTGTAC-TAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAA 40810 ||||| ||||| | || | || |||| |||||| || ||||||| | || ||||| Sbjct 571 TTTATAAAAGGATCAACCTCATCACTAGAA-TTATCATCAAAAGGAGTGAATATCTGGAA 629 Query 40811 TGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGA 40870 || | | ||| |||| ||||| || ||||||||| ||| || ||||| || Sbjct 630 TGGAAATGGATCTCAAACTTATTTAAAGAGTATAGGATTAACAGAAAGATCAGAAGGAGA 689 Query 40871 TCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTA 40930 ||| || || ||||||||||||| | | |||||||||| ||| ||||| | ||| | | Sbjct 690 TCTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATAAAACTTTTAA 749 Query 40931 CTCTGATTATACCAATAAAGGAATGGATCAATT---ACAGTGCGTT-AT-AGATACGATT 40985 ||||||| ||||| || |||||||| | |||| || || | || | ||| Sbjct 750 AGATGATTATCATGGAAAAGGTATTGATCAATTAAAAGAGTGTATTCATAAAATTCAATT 809 Query 40986 AAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACAT 41045 ||||| || ||| || | || || || | || ||||| || | || || | Sbjct 810 TAATCCAAT--TGAT---CGTAGAATCATTTTAAGTGCTTGGAATCCTTCTGATTTATCT 864 Query 41046 TTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTT 41090 |||||| | || ||||||||| |||| ||||| ||||| ||| Sbjct 865 AAAATGGCACTTCCTCCTTGTCATATGTTTTGTCAATTTTATGTT 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397314434246125