Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05-
22] 29,225 sequences; 62,222,430 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq6930 156 3e-33
seq20492 132 4e-26
>seq6930
Length=2728
Score = 156 bits (172), Expect = 3e-33
Identities = 283/410 (69%), Gaps = 13/410 (3%)
Strand=Plus/Minus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
||||| || || |||||||| ||||| | || |||| ||| || |||| || |||||
Sbjct 1400 CCCAAGATCGTCAATGGTCCCGAAATTCTCAACAAATTTGTGGGAGAATCCGAGAAAAAT 1341
Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548
| ||| | |||||||| ||||||| |||| | ||| | |||| | || ||
Sbjct 1340 ATTCGAGAGCTATTTGCTGATGCTGAAGTAGAATACAAA-GCGAAGGGAGATGAA--TCA 1284
Query 19549 ---TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---- 19601
|| |||||||| || | |||||||||||||| || ||||| || ||||| ||
Sbjct 1283 GGCTTACACATTATCATTTTCGATGAATTGGACGCGATTTGTAAACAGAGAGGATCAACG 1224
Query 19602 --TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGT 19659
||||| | |||||| || | |||||||||||||| || || || | ||||||
Sbjct 1223 GGTGGTGGGACTGGAGTGGGCGATTCGGTTGTCAATCAACTTCTCTCCAAGATGGACGGT 1164
Query 19660 GTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGAC 19719
|| | ||||| || ||||| || | ||||| ||||| ||| | | || | || |||
Sbjct 1163 GTAGATCAACTTAACAATATCTTGATCATTGGGATGACCAATCGTTTAGACATGATTGAC 1104
Query 19720 AGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAA 19779
|| | |||||||| ||||| || ||| | | || ||||| || || |||||
Sbjct 1103 GAAGCACTCTTACGACCTGGTCGATTAGAAGTTCACATGGAAATCTCTTTGCCTGATGAG 1044
Query 19780 TGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATG-CGACAAA 19828
|||| || | | ||||| ||||| ||||| ||| ||| ||||||
Sbjct 1043 GGTGGTCGACTACAGATTTTGAACATCCATACTGCAAAGATGAGGACAAA 994
>seq20492
Length=5790
Score = 132 bits (146), Expect = 4e-26
Identities = 277/405 (68%), Gaps = 12/405 (3%)
Strand=Plus/Plus
Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751
|| || || ||||| || |||||| | ||| |||| ||| | | ||| | |||||
Sbjct 511 TTACCATTACTAACCACCAAAAAAGTCTTTACAAAAGCCATCATACATGAATTACTATGG 570
Query 40752 TTTATCAAAGGTTGTAC-TAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAA 40810
||||| ||||| | || | || |||| |||||| || ||||||| | || |||||
Sbjct 571 TTTATAAAAGGATCAACCTCATCACTAGAA-TTATCATCAAAAGGAGTGAATATCTGGAA 629
Query 40811 TGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGA 40870
|| | | ||| |||| ||||| || ||||||||| ||| || ||||| ||
Sbjct 630 TGGAAATGGATCTCAAACTTATTTAAAGAGTATAGGATTAACAGAAAGATCAGAAGGAGA 689
Query 40871 TCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTA 40930
||| || || ||||||||||||| | | |||||||||| ||| ||||| | ||| | |
Sbjct 690 TCTAGGACCGATTTATGGATTTCAATGGAGACATTTTGGTGCAGAATATAAAACTTTTAA 749
Query 40931 CTCTGATTATACCAATAAAGGAATGGATCAATT---ACAGTGCGTT-AT-AGATACGATT 40985
||||||| ||||| || |||||||| | |||| || || | || | |||
Sbjct 750 AGATGATTATCATGGAAAAGGTATTGATCAATTAAAAGAGTGTATTCATAAAATTCAATT 809
Query 40986 AAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACAT 41045
||||| || ||| || | || || || | || ||||| || | || || |
Sbjct 810 TAATCCAAT--TGAT---CGTAGAATCATTTTAAGTGCTTGGAATCCTTCTGATTTATCT 864
Query 41046 TTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTT 41090
|||||| | || ||||||||| |||| ||||| ||||| |||
Sbjct 865 AAAATGGCACTTCCTCCTTGTCATATGTTTTGTCAATTTTATGTT 909
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397314434246125
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |