Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq24802 93.3 5e-14 seq25269 82.4 9e-11 >seq24802 Length=2283 Score = 93.3 bits (102), Expect = 5e-14 Identities = 259/391 (66%), Gaps = 10/391 (3%) Strand=Plus/Plus Query 118431 GCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG 118490 || || |||||||||||||| | || || || || ||||||||| | ||||| || Sbjct 1793 GCTTCAAGGGCTGCGTGATAGAGCGTCTCGAAGATCTGAGCATTCAATTTTTTGGCTTCC 1852 Query 118491 TCGGAATCAAACGCGAGTCGGCACAAAAT-AAATACATCCGCGAGACCTTGGACACCGAG 118549 ||||| || | || | || | | ||| |||| || | || | || |||| Sbjct 1853 GGTGAATCGAATGGAAG-CTTCAAGATTTGAAAGGCATCTGCTAATCCGTTTACTCCGAT 1911 Query 118550 GCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC-ACGGGATAAAAATTCC 118608 || || || ||||||||||| || ||||| ||| ||| ||||| || ||||| Sbjct 1912 TCCGATGGGACGATGTCTCATGTTGGACTTTTTAGCT-TCTGGGACGGGGTAGTAATTCA 1970 Query 118609 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 118668 ||| || | | ||| | || ||||| |||| || | || || ||||||| | Sbjct 1971 CATCTATTATACGATTCAAGTTCCACGTGACTTCCTTCGTCACCTCGTGTAGCTTTTGGA 2030 Query 118669 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 118728 ||||| | || || | || ||| |||| | || || ||||| || ||||| |||| Sbjct 2031 AATCATA-----GACTC-CGTCGGTGATATACGTCGGCAGCGCGATCGAGGCCAGGTTAC 2084 Query 118729 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCT 118788 | || | |||||| | | ||||| || || || || || | ||| || || Sbjct 2085 AAACCGCCACCTCATCTGGGGCTGAATACTCGATGATCTCAGTACAAAGGTTCGATGACT 2144 Query 118789 TAATGGTGCCCAAGTTCTTTTGATTTGACTT 118819 | |||||||| | |||||||||||| || || Sbjct 2145 TGATGGTGCCAAGGTTCTTTTGATTCGATTT 2175 >seq25269 Length=7113 Score = 82.4 bits (90), Expect = 9e-11 Identities = 181/267 (68%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 179856 ATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAA-CTCTTGGTTTG 179914 ||| | ||| ||||||||||| |||| ||||| |||| || ||||| ||| ||| | Sbjct 1829 ATATTTCTTGCCTTGTTGAAGTCCCATAATCTTTTTGATAT-GTTGAATCTCAGCGTTCG 1887 Query 179915 ATGTGAGTTGCG--CCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAA 179972 | ||| | |||||| || ||||| || ||| | || ||||| || ||||| Sbjct 1888 CCAACAATTGAGTCCCACTG--GCTTCTCGAACGTTTAATAATTTTCCACGAAGTGGGAA 1945 Query 179973 CACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGA 180032 ||||| || | |||||| |||| || | | |||||||| || | | || || || Sbjct 1946 AACACCATAATTATCACGCCCAATGACTGTTAACCCAGCAACAGCCAATGATTTGGCTGA 2005 Query 180033 ATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGC 180092 ||| || ||||| | || | ||||||| | | | || |||||| || || || || Sbjct 2006 ATCTCCTTCCGTTAAAATCAAAGTACACTCTGCCGCTTTCTTCGTCCCCGCGTTATTGGC 2065 Query 180093 GTCGTCCAACTTGGGAATACCAGTAAT 180119 || || | ||| ||| ||||| || Sbjct 2066 ATCCTCTAGTTTGACAATTCCAGTGAT 2092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618209277891000