Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05-
22] 29,225 sequences; 62,222,430 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq24802 93.3 5e-14
seq25269 82.4 9e-11
>seq24802
Length=2283
Score = 93.3 bits (102), Expect = 5e-14
Identities = 259/391 (66%), Gaps = 10/391 (3%)
Strand=Plus/Plus
Query 118431 GCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCG 118490
|| || |||||||||||||| | || || || || ||||||||| | ||||| ||
Sbjct 1793 GCTTCAAGGGCTGCGTGATAGAGCGTCTCGAAGATCTGAGCATTCAATTTTTTGGCTTCC 1852
Query 118491 TCGGAATCAAACGCGAGTCGGCACAAAAT-AAATACATCCGCGAGACCTTGGACACCGAG 118549
||||| || | || | || | | ||| |||| || | || | || ||||
Sbjct 1853 GGTGAATCGAATGGAAG-CTTCAAGATTTGAAAGGCATCTGCTAATCCGTTTACTCCGAT 1911
Query 118550 GCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC-ACGGGATAAAAATTCC 118608
|| || || ||||||||||| || ||||| ||| ||| ||||| || |||||
Sbjct 1912 TCCGATGGGACGATGTCTCATGTTGGACTTTTTAGCT-TCTGGGACGGGGTAGTAATTCA 1970
Query 118609 TATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGT 118668
||| || | | ||| | || ||||| |||| || | || || ||||||| |
Sbjct 1971 CATCTATTATACGATTCAAGTTCCACGTGACTTCCTTCGTCACCTCGTGTAGCTTTTGGA 2030
Query 118669 AATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTAC 118728
||||| | || || | || ||| |||| | || || ||||| || ||||| ||||
Sbjct 2031 AATCATA-----GACTC-CGTCGGTGATATACGTCGGCAGCGCGATCGAGGCCAGGTTAC 2084
Query 118729 ACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCT 118788
| || | |||||| | | ||||| || || || || || | ||| || ||
Sbjct 2085 AAACCGCCACCTCATCTGGGGCTGAATACTCGATGATCTCAGTACAAAGGTTCGATGACT 2144
Query 118789 TAATGGTGCCCAAGTTCTTTTGATTTGACTT 118819
| |||||||| | |||||||||||| || ||
Sbjct 2145 TGATGGTGCCAAGGTTCTTTTGATTCGATTT 2175
>seq25269
Length=7113
Score = 82.4 bits (90), Expect = 9e-11
Identities = 181/267 (68%), Gaps = 6/267 (2%)
Strand=Plus/Plus
Query 179856 ATAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAA-CTCTTGGTTTG 179914
||| | ||| ||||||||||| |||| ||||| |||| || ||||| ||| ||| |
Sbjct 1829 ATATTTCTTGCCTTGTTGAAGTCCCATAATCTTTTTGATAT-GTTGAATCTCAGCGTTCG 1887
Query 179915 ATGTGAGTTGCG--CCACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAA 179972
| ||| | |||||| || ||||| || ||| | || ||||| || |||||
Sbjct 1888 CCAACAATTGAGTCCCACTG--GCTTCTCGAACGTTTAATAATTTTCCACGAAGTGGGAA 1945
Query 179973 CACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGA 180032
||||| || | |||||| |||| || | | |||||||| || | | || || ||
Sbjct 1946 AACACCATAATTATCACGCCCAATGACTGTTAACCCAGCAACAGCCAATGATTTGGCTGA 2005
Query 180033 ATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCCTTGTTCGC 180092
||| || ||||| | || | ||||||| | | | || |||||| || || || ||
Sbjct 2006 ATCTCCTTCCGTTAAAATCAAAGTACACTCTGCCGCTTTCTTCGTCCCCGCGTTATTGGC 2065
Query 180093 GTCGTCCAACTTGGGAATACCAGTAAT 180119
|| || | ||| ||| ||||| ||
Sbjct 2066 ATCCTCTAGTTTGACAATTCCAGTGAT 2092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618209277891000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |