Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq24802 91.5 2e-13 >seq24802 Length=2283 Score = 91.5 bits (100), Expect = 2e-13 Identities = 311/477 (65%), Gaps = 16/477 (3%) Strand=Plus/Minus Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 ||||||||||| | || |||||| || || || ||||| || ||| | || | | Sbjct 2169 AATCAAAAGAACCTTGGCACCATCAAGTCATCGAACCTTTGTACTGAGATCATCGAGTAT 2110 Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085 ||| | ||||||| ||| || |||||||| || || ||||| || || | |||| | Sbjct 2109 TCAGCCCCAGATGAGGTGGCGGTTTGTAACCTGGCCTCGATCGCGCTGCCGACGTATAT- 2051 Query 105086 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACC 105145 || ||| || | | ||||| |||| || ||||| || ||||| ||||| Sbjct 2050 ----CACCGACGGAGTC-TATGATTTCCAAAAGCTACACGAGGTGACGAAGGAAGTCACG 1996 Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATC 105204 ||| | || | | || ||| |||| |||||||| ||| ||| || || Sbjct 1995 TGGAACTTGAATCGTATAATAGATGTGAATTACTACCCCGTCCCAGA-AGCTAAAAAGTC 1937 Query 105205 TAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATG-TATTCATTC 105263 || |||||||| ||||| || || |||| || | || | || |||| |||| Sbjct 1936 CAACATGAGACATCGTCCCATCGGAATCGGAGTAAACGGATTAGCAGATGCCTTTCAAAT 1877 Query 105264 TTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGA 105323 ||| || | |||| ||||| ||||| || || | ||||| | || || |||| Sbjct 1876 CTTGAAGCTTC-CATTCGATTCACCGGAAGCCAAAAAATTGAATGCTCAGATCTTCGAGA 1818 Query 105324 CCATGTATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCAT 105380 | | |||||||| || ||||| || ||| ||| | || | | || || ||| Sbjct 1817 CGCTCTATCACGCAGCCCTTGAAGC---CTCAAACGAGCTTGCCGTGTCGGAAGGCGCAT 1761 Query 105381 ATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 105437 | ||||| ||| ||||| || ||| ||| | || |||| ||||||||||| Sbjct 1760 ACGAAACGTTTCCCGGTTCGCCCGCTAGTTTAGGAGAACTCCAATATGATATGTGGG 1704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583047727539000