Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq25269 123 8e-23 seq8761 120 9e-22 seq16220 118 3e-21 seq21451 111 5e-19 seq23082 104 7e-17 seq23081 104 7e-17 seq964 100 9e-16 >seq25269 Length=7113 Score = 123 bits (136), Expect = 8e-23 Identities = 272/405 (67%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 67897 GAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCTATCATCACGGT 67956 || || ||||| || ||| | | ||||| | | |||||||||| |||||||||||| Sbjct 1000 GAGATCAAAGTAGCTCAACTGGGAGGTTACTGTGCCGAACATTCAGCCTATCATCACGGA 941 Query 67957 GAAGCTAGTTTAAATTCATCAATTGTAGGTTTAGCTCAGAATTTTGTTGGATCAAATAAT 68016 ||| ||| | | | | ||||| | | || || || ||||| ||| ||||| Sbjct 940 GAACAAAGTCTTACACAAACGATTGTCGCACTCGCACAAAACTTTGTCGGAAGCAATAAC 881 Query 68017 ATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACTTGGAGGAAAAGATGCT 68076 ||||| | || ||| || || |||||||| || ||| | ||| || |||||||| Sbjct 880 ATTAACGTTCTTTCACCCAATGGACAATTTGGTACAAGAGCAAATGGCGGTAAAGATGCA 821 Query 68077 GCATCTGAAAGATATATATTTACACATCTAAATACTTTAACTAGACTTATCTTTAGACAA 68136 || |||| ||| ||||| ||||| || | | | | ||||| ||||| | Sbjct 820 GCCTCTGCAAGGTATATCTTTACCAATATTGAAAAGATTACTAGGGCGATCTTCCCGCCT 761 Query 68137 GAAGATGATAATATTCTTGAA-TATTTAGAAGATGATGGTGATAAAGTTGAGCCAATCTA 68195 ||||||| | || ||||| |||||| ||||| || | | || | || || | Sbjct 760 CAAGATGACCACGTT-TTGAATTATTTAACTGATGACGGAGCTCAAATCGAACCTGAATG 702 Query 68196 TTATGTTCCTATTATTCCTATGATTTTAGTAAATGGTTCAAAAGGGATTGGCACTGGATT 68255 ||||| ||| | | || ||| | ||||||||||| |||| || ||||| || |||| Sbjct 701 GTATGTACCTGTCTTACCGATGGTCTTAGTAAATGGATCAAGTGGAATTGGGACAGGATG 642 Query 68256 TAGTACAGATATTATGTGTTATAATCCATTACAAATTATCAAAAA 68300 ||| ||||||| | ||||||||| | | ||| || |||| Sbjct 641 GAGTTCAGATATACCGAATTATAATCCGATGGATATTGTCGAAAA 597 >seq8761 Length=3720 Score = 120 bits (132), Expect = 9e-22 Identities = 334/501 (67%), Gaps = 16/501 (3%) Strand=Plus/Plus Query 266921 AGATGGTTATAATTTTGCAAAAGTTCGTCTAAGAACATTACGCCAACCAGTAATCGGCGA 266980 |||||| | || |||| ||||||| | | ||| | | | ||| | || || || Sbjct 1815 AGATGGATTAAAATTTGTAAAAGTTAGAATTAGATCTACAAGAATACCTGAAACAGGAGA 1874 Query 266981 TAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTAT-TCCTGAAGAAA 267039 ||||||| | | | || |||||||||||||| | || | |||| | ||||| Sbjct 1875 TAAATTTGCATCTAGACATGGACAAAAAGGTACAGTAGGGATT-TTATATAGACAAGAAG 1933 Query 267040 ATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGCTATTC 267099 |||||||||||| || |||||| | || ||||| |||||||||||||||||||| | Sbjct 1934 ATATGCCATTTACATCTGAAGGAATTTGTCCGGATATCATTATTAATCCTCATGCTATCC 1993 Query 267100 CTAGTCGTATGACAATTGGTCAATTAAAAGAGACACTTTTAGGAAAAGTTTTATTAGAAT 267159 | |||||||| ||||| || ||| || | ||| | ||||||| || ||| Sbjct 1994 CATCACGTATGACGATTGGACATTTAGTTGAATGTTTGTTAAGTAAAGTTT--CTACAAT 2051 Query 267160 --TAGGTTTATTTGGTGATGGTACTAGTTTTGGTGAATTTAATATAAAAGATATTTGTAA 267217 ||| ||||||| ||| || |||| | | || ||| |||| Sbjct 2052 CACAGGAAATGAAGGTGATGCTACACCATTCAGTGATGTGACAGTAGAAGCGATTT---C 2108 Query 267218 AGAATTAC---AAAATATTGGTTATGAATCTAAAGGTAATGAAATATTATATGATGGATT 267274 ||| |||| | || | ||| ||| |||||| |||| ||||| | ||| |||| | Sbjct 2109 AGACTTACTTAAGAAAAATGGATATCAATCTAGAGGTTTAGAAATTATGTATAATGG-TC 2167 Query 267275 AT-CTGGTGAACAGATGAGAAC-AAATGTATTTATCGGGCCAGCATTTTATCAAAGATTA 267332 || |||| | | | ||| | ||||| | | | || ||| | | |||||||||||| Sbjct 2168 ATACTGGACGAAAACTTAGAGCTCAATGT-TATCTTGGTCCAACTTATTATCAAAGATTG 2226 Query 267333 AAACATATGGTTAGTGATAAACAACATAGTAGAAGTATTGGTCCTATGGTAAATTTAACT 267392 ||||||||||| | ||||||| ||| |||| | |||||| | || |||||| Sbjct 2227 AAACATATGGTGAATGATAAAATTCATTCTAGAGCAAGAGGTCCTGTACAAATCTTAACT 2286 Query 267393 CGTCAACCAGCGGAAGGTAGA 267413 | ||||| | ||||||||| Sbjct 2287 AGACAACCGGTTGAAGGTAGA 2307 Score = 91.5 bits (100), Expect = 4e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 251155 TTCTAATAATTGTCCAATGGTCATTCTACTAGGCAATGCGTGTGGATTAATAATAATATC 251214 ||| | ||| |||||||| ||||| | || | || || ||||||||||| ||||| Sbjct 2025 TTCAACTAAATGTCCAATCGTCATACGTGATGGGATAGCATGAGGATTAATAATGATATC 1966 Query 251215 TGGACGAATTCCATCTTCAGTAAAAGGCATATTTTTCTCATCAATAACTAAA---CCAAT 251271 |||| |||||| || ||||| |||||| | |||| || ||| |||| || | Sbjct 1965 CGGACAAATTCCTTCAGATGTAAATGGCATA-TCTTCTTGTCTATA--TAAAATCCCTAC 1909 Query 251272 AGTACCTTTTTGTCCACATCTACTACAAAACTTATCTCCAATTGCAGGAATTCTTTCATC 251331 ||||||||||||||| |||| ||| |||||||| || |||| |||||| | Sbjct 1908 TGTACCTTTTTGTCCATGTCTAGATGCAAATTTATCTCCTGTTTCAGGTATTCTTGTAGA 1849 Query 251332 ACGAACTCTTACTTTTGCTAACCGAAATCCTTCTT 251366 | || ||| |||||| | || ||||| |||| Sbjct 1848 TCTAATTCTAACTTTTACAAATTTTAATCCATCTT 1814 Score = 84.2 bits (92), Expect = 7e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 266350 CACCTCGTCTAACATATCAATGTGCAATGGGTAAACAGGCTATGGGTATCTATGTTACAA 266409 |||||||| |||||||||| ||||||||||||||| ||||||||| | ||| | |||| Sbjct 1232 CACCTCGTAATACATATCAATCTGCAATGGGTAAACAAGCTATGGGTGTTTATTTAACAA 1291 Query 266410 ATTTTAATAATAGAATGGATA 266430 |||| | | |||||||||| Sbjct 1292 ATTTCAGAATGAGAATGGATA 1312 >seq16220 Length=1922 Score = 118 bits (130), Expect = 3e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 140559 TTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGC 140618 || ||||||| | || || || ||||||||||||||||| || ||||| | |||||| Sbjct 3 TTGTAATCAGCAAGGGTACGTCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGT 62 Query 140619 TGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCA 140678 ||||| || ||||| ||||||||||| || || || || || || || ||||| | ||| Sbjct 63 TGATCCGGTGGAATACCTTCTTTATCTTGGATCTTGGCCTTGACGTTGTCAATGGTATCG 122 Query 140679 GATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || | ||| || || || || | ||||| |||||||| Sbjct 123 GAAGATTCGACCTCGAGGGTGATAGTCTTCCCGGTTAG 160 >seq21451 Length=1854 Score = 111 bits (122), Expect = 5e-19 Identities = 233/344 (68%), Gaps = 10/344 (3%) Strand=Plus/Plus Query 378168 GTTTCTTACAGTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCG 378227 ||||| ||| || |||||| ||||| | ||| ||||| ||||| | | || || Sbjct 1212 GTTTCGTACCGTTCCATCATAAGCTACCATCACATCCTCTAACGCTTTCACCAATCTTCT 1271 Query 378228 AGAAATATAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACC 378287 |||||||| || | || || || || |||||||| ||||| ||||||| | Sbjct 1272 CTGGATATAACCTGTCTCTGCTGTCTTTACAGCGGTATCAATCAAACCTTCACGACCGGC 1331 Query 378288 CATTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAA 378347 ||| ||||| ||||| || || || || | ||| | || | | ||| |||||| ||| Sbjct 1332 CATAGCATGAAAGAAGAACTCCTGTGGTGTCAATCCCCGAAGATAAGAATTCTCAACAAA 1391 Query 378348 TCCTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAA 378407 ||| | | | ||||| | ||||| || || |||| || || ||||||| || || Sbjct 1392 TCCACGAGATTCGGGCGAGTAATCATCCTTGGTGAAATGGGGCAAGGTACGATACTTGAA 1451 Query 378408 CCCATATGGAATTCGTTTTCCATCAACATTCTGTTGACCAAGTGCAGAAAC---CATTTG 378464 || || ||||||||||| || || || ||||| || | || || | |||||| Sbjct 1452 ACCGTAAGGAATTCGTTTACCCTCGACTGATTGTTGTCCGA---CACAAGCTGACATTTG 1508 Query 378465 AGCAATATT--TAAATCACTACCTTTAGACCCAGCATTAACCAT 378506 || || || | ||| | |||||| || ||||| | ||||| Sbjct 1509 AGAGATGTTGATGAATGA--ACCTTTCGAGCCAGCCGTGACCAT 1550 >seq23082 Length=2745 Score = 104 bits (114), Expect = 7e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 || ||||| ||||| || || || ||||| || |||||||| ||||||||| | | || Sbjct 681 ATCGATGATGTAGTCTTGGTCGGAGGTTCCACCCGTATTCCTAAAGTTCAAGAACTTCTC 622 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 |||| || || ||||||||||| || | ||| || || |||||||||||||| Sbjct 621 AAGGAGTACTTCAACGGCAAAGAACCCTCCAAGGGAATCAACCCCGATGAAGCTGTTGCG 562 Query 350297 TATGGTGCTGCTGTTCA 350313 | ||||||||||||||| Sbjct 561 TTTGGTGCTGCTGTTCA 545 Score = 89.7 bits (98), Expect = 2e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 || |||||||||| |||||| | |||||||||||||| ||||| ||| || || Sbjct 540 CACCTTGAACAGCAGCACCAAACGCAACAGCTTCATCGGGGTTGATTCCCTTGGAGGGTT 599 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 ||||||| || || | || || | || ||||| ||| ||||| | || ||||| | Sbjct 600 CTTTGCCGTTGAAGTACTCCTTGAGAAGTTCTTGAACTTTAGGAATACGGGTGGAACCTC 659 Query 183370 CGACTAATACTACTTCATCGAT 183391 |||| || ||||| |||||||| Sbjct 660 CGACCAAGACTACATCATCGAT 681 Score = 89.7 bits (98), Expect = 2e-12 Identities = 178/264 (67%), Gaps = 11/264 (4%) Strand=Plus/Minus Query 349634 TTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTT 349693 || || || || |||||| ||||| || ||||| || | || || || || || ||| Sbjct 1351 TTCAACGACGCTCAGCGTCAGGCAACCAAGGATGCCGGTATGATCGCTGGTTTGAACGTT 1292 Query 349694 CTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGT 349753 || | || | || || || || || || || ||||| ||||| ||||| || Sbjct 1291 CTTCGTATTGTCAACGAGCCAACCGCCGCCGCTATTGCCTATGGTCTTGACAA------- 1239 Query 349754 GACCAAG----aaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATC 349809 ||||||| || | | || || | | ||| | || |||||||| || ||||| || Sbjct 1238 GACCAAGGGTGAACGACAAATCATTGTGTACGATCTTGGAGGTGGTACCTTCGATGTCTC 1179 Query 349810 ACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCT 349869 || || | | || ||||| | ||||| || || || ||||||||||| || | Sbjct 1178 TCTCCTTTCCATCGATGAGGGTGTCTTTGAGGTGTTGGCTACAGCTGGTGATACCCACTT 1119 Query 349870 TGGTGGAGAAGATTTTGATAATCG 349893 ||||| |||||||| ||||| || Sbjct 1118 GGGTGGTGAAGATTTCGATAACCG 1095 >seq23081 Length=2318 Score = 104 bits (114), Expect = 7e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 || ||||| ||||| || || || ||||| || |||||||| ||||||||| | | || Sbjct 1638 ATCGATGATGTAGTCTTGGTCGGAGGTTCCACCCGTATTCCTAAAGTTCAAGAACTTCTC 1697 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 |||| || || ||||||||||| || | ||| || || |||||||||||||| Sbjct 1698 AAGGAGTACTTCAACGGCAAAGAACCCTCCAAGGGAATCAACCCCGATGAAGCTGTTGCG 1757 Query 350297 TATGGTGCTGCTGTTCA 350313 | ||||||||||||||| Sbjct 1758 TTTGGTGCTGCTGTTCA 1774 Score = 89.7 bits (98), Expect = 2e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 || |||||||||| |||||| | |||||||||||||| ||||| ||| || || Sbjct 1779 CACCTTGAACAGCAGCACCAAACGCAACAGCTTCATCGGGGTTGATTCCCTTGGAGGGTT 1720 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 ||||||| || || | || || | || ||||| ||| ||||| | || ||||| | Sbjct 1719 CTTTGCCGTTGAAGTACTCCTTGAGAAGTTCTTGAACTTTAGGAATACGGGTGGAACCTC 1660 Query 183370 CGACTAATACTACTTCATCGAT 183391 |||| || ||||| |||||||| Sbjct 1659 CGACCAAGACTACATCATCGAT 1638 >seq964 Length=784 Score = 100 bits (110), Expect = 9e-16 Identities = 170/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 ||||||| || |||||||| ||||| || | || || || |||| |||||||| || | Sbjct 110 GAACTGCTTGCGAACGTGCCAAGCGAACCCTCTCCTCCGCTGCCCAGACCTCTATCGAGA 169 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 | || |||||| ||| || || |||| | ||||| |||| |||||||| || || | Sbjct 170 TCGACTCTCTTTTTGAGGGTGTTGACTTCTATACATCTCTTACCCGTGCTCGATTCGAGG 229 Query 350097 AATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGA-T 350155 || | || || | || || || ||||| ||||| || ||||| || | ||| | Sbjct 230 AACTCTGCCAAGACTTGTTCAGGAAGACCATGGAGCCTGTTGAGAAAGTGTTGAGAGACT 289 Query 350156 GCAAAAATGTCCAAAAATCAGATTG-ATGAAGTAGTTTTAGTTGGTGGTTCTACACGTAT 350214 ||| | || | || || || |||| | || |||||||||||||| || ||||| Sbjct 290 CCAAGATTGAC--AAGGCCAACGTGCATGAGATCGTATTAGTTGGTGGTTCCACCCGTAT 347 Query 350215 TCC 350217 || Sbjct 348 CCC 350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514687020092675