Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq25269 89.7 2e-13 >seq25269 Length=7113 Score = 89.7 bits (98), Expect = 2e-13 Identities = 287/435 (66%), Gaps = 13/435 (3%) Strand=Plus/Plus Query 64839 TCAAGTAATCAATGATTTCTAACGGATTATAACACATAATGTCAGTACTAAATCCTGTGC 64898 |||||| || | || || | |||||||||| | || || | ||| ||||||| | Sbjct 592 TCAAGTTTTCGACAATATCCATCGGATTATAATTCGGTATATCTGAACTCCATCCTGTCC 651 Query 64899 CAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAGATAGGCT 64958 |||| || |||| ||||||| ||| | |||||| | | ||| |||| | ||| | Sbjct 652 CAATTCCACTTGATCCATTTACTAAGACCATCGGTAAGACAGGTACATACCATTCAGGTT 711 Query 64959 CAACAATGAGA-CCATCATCATCCAAATACTTCAAAATGGCATCATCCTCTTTTGGAAAT 65017 | | |||| || |||||| ||||| ||||||| | ||||| | || || Sbjct 712 CGATT-TGAGCTCCGTCATCAGTTAAATAATTCAAAACGTGGTCATCTTGAGGCGGGAAG 770 Query 65018 ATAGAACGAGTTATTTTATTCAAT-TGAGTATAAATATATCTTTCGGATGCGTGGTCTTG 65076 || | | ||| || || |||||| | ||| | ||||| ||| | || || |||| Sbjct 771 ATCGCCCTAGTAATCTT-TTCAATATTGGTAAAGATATACCTTGCAGAGGCTGCATCTTT 829 Query 65077 TCC---AGTTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAA--TTAATATTGTTT 65131 || | || || ||| ||||| || ||||| || | || || ||||| || || Sbjct 830 ACCGCCATTTGCTCTTGTACCAAATTGTCCATTGGG--TGAAAGAACGTTAATGTTATTG 887 Query 65132 GAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGA 65191 || | ||| || || || | | ||| ||| | | | | ||| ||| |||||| Sbjct 888 CTTCCGACAAAGTTTTGTGCGAGTGCGACAATCGTTTGTGTAAGACTTTGTTCTCCGTGA 947 Query 65192 TGATATCCTGAATGTTCAGAGACA-TATCCACTAAATTGAGCAACTTTTATTTCCGTTGT 65250 ||||| |||||||||| | ||| || || | | |||||| ||||| || |||| | | Sbjct 948 TGATAGGCTGAATGTTC-GGCACAGTAACCTCCCAGTTGAGCTACTTTGATCTCCGCTTT 1006 Query 65251 TAAATTCTTTTTAAA 65265 || ||| |||| || Sbjct 1007 CAATTTCCTTTTGAA 1021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235596055571250