Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq24802 82.4 8e-11 >seq24802 Length=2283 Score = 82.4 bits (90), Expect = 8e-11 Identities = 195/290 (67%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 78868 AAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTT 78927 ||| |||| || | || | || ||||| |||| || || || | ||||||| |||| Sbjct 1883 AAGGCATCTGCTAATCCGTTTACTCCGATTCCGATGGGACGATGTCTCATGTTGGACTTT 1942 Query 78928 CGGGCCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGAC 78986 || | | || |||| || | ||| ||| || | || |||| ||| | |||||| Sbjct 1943 TTAGCTTC-TGGGACGGGGTAGTAATTCACATCTATTATACGATTCAAGTTCCACGTGAC 2001 Query 78987 GACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTT--TGATGAAAGTC 79044 || |||||||||| | || ||||||| | || | | | |||| | ||| Sbjct 2002 TTCCTTCGTCACCTCGTGTAGCTTTTGGAAATCATA--GACTCCGTCGGTGATATACGTC 2059 Query 79045 GGTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATG 79104 || || | ||| |||||||| || || ||| ||| || ||| ||| ||||||| Sbjct 2060 GGCAGCGCGATCGAGGCCAGGTTACAAACCGCCACCTCATCTGGGGCTGAATACTCGATG 2119 Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTT 79154 || || || || | || || |||||||||||||| | |||||| || || Sbjct 2120 ATCTCAGTACAAAGGTTCGATGACTTGATGGTGCCAAGGTTCTTTTGATT 2169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548324417034000