Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq16220 100 7e-16 seq25279 96.9 8e-15 >seq16220 Length=1922 Score = 100 bits (110), Expect = 7e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 ||||||||||| || || | || ||||||||||| ||||| ||| ||||| |||||| Sbjct 406 CGTTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGAATCTTGGCTTTGACGTTGTCGATG 465 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| |||||||||||| ||||| || || || |||||| Sbjct 466 GTGTCAGAAGATTCAACCTCGAGGGTGATGGTTTTGCCGGTGAGA 510 >seq25279 Length=2861 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 210982 AGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGT 211041 |||| || ||||||||||| || |||| |||||||| || || ||||| ||||| | Sbjct 2147 AGATGAGTCGTTGTTGGTCCGGGGGAATGCCTTCCTTTTCTTGAATCTTGGTCTTCACAT 2088 Query 211042 TTTCGATGGTGTCAG-AGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTT 211100 | || || ||||| | ||||| | |||||||||||||| ||||| |||||||| | | | Sbjct 2087 TGTCAATTGTGTCGGCAGCTT-CGACCTCGAGAGTGATAGTCTTACCCGTGAGGCTGTGT 2029 Query 211101 ACAAA 211105 ||||| Sbjct 2028 ACAAA 2024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158717960967125