Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melampsora_20aecidioides_20[genbank_20GCA_5F002157015.1_202017-05- 22] 29,225 sequences; 62,222,430 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq16220 91.5 4e-13 seq25279 84.2 5e-11 >seq16220 Length=1922 Score = 91.5 bits (100), Expect = 4e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 |||||||| || | || | || ||||| || || || || |||||||| | |||||| Sbjct 3 TTGTAATCAGCAAGGGTACGTCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAAACGTTGT 62 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 || || || ||||||||||| || ||||||||||| ||| || || ||||| || Sbjct 63 TGATCCGGTGGAATACCTTCTTTATCTTGGATCTTGGCCTTGACGTTGTCAATGGTATCG 122 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || | ||| || || | ||||| ||||| || || Sbjct 123 GAAGATTCGACCTCGAGGGTGATAGTCTTCCCGGT 157 >seq25279 Length=2861 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 225581 AGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAG 225640 |||| |||||||||||||| || ||||| |||||||| ||||| ||||| ||||||| Sbjct 2147 AGATGAGTCGTTGTTGGTCCGGGGGAATGCCTTCCTTTTCTTGAATCTTGGTCTTCACAT 2088 Query 225641 CTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || ||||| | | ||| || || | ||||| ||||| ||||| Sbjct 2087 TGTCAATTGTGTCGGCAGCTTCGACCTCGAGAGTGATAGTCTTACCCGT 2039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192084662282150